Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_F06
         (236 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10970| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.4  
SB_54325| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.1  
SB_44210| Best HMM Match : Ubiq_cyt_C_chap (HMM E-Value=2.3)           26   4.1  
SB_43852| Best HMM Match : DnaJ (HMM E-Value=1.7e-37)                  26   5.5  
SB_47014| Best HMM Match : rve (HMM E-Value=6.8e-21)                   25   9.6  
SB_13883| Best HMM Match : 7tm_1 (HMM E-Value=6e-08)                   25   9.6  

>SB_10970| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1256

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 5   KVRAIYNMGPRESLKNKFPEYDILTLPSQYIFDNLMHI 118
           K+  ++  GP E    K  EYD++T  S  +F+   HI
Sbjct: 523 KMVVLFGYGPEEGFTQKVQEYDLMT-NSWQLFNVSSHI 559


>SB_54325| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 682

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 9/37 (24%), Positives = 23/37 (62%)
 Frame = +2

Query: 86  SQYIFDNLMHIRKNLDKLDRVNDRHNFNIRSKDKLAV 196
           S+Y  +NL + +  ++K   ++ +H  +I+  DK+++
Sbjct: 40  SKYHQENLYYFKSRIEKGKEISKKHTVDIKLNDKVSL 76


>SB_44210| Best HMM Match : Ubiq_cyt_C_chap (HMM E-Value=2.3)
          Length = 368

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +2

Query: 92  YIFDNLMHIRKNLDKLDRVNDRHNFNIRSKDKLAVP 199
           Y+F  L  + ++   L ++ D+HN+N R+K  + +P
Sbjct: 289 YVFKCLNGLVEHEMDLLKLEDQHNYNTRNKCNIRLP 324


>SB_43852| Best HMM Match : DnaJ (HMM E-Value=1.7e-37)
          Length = 399

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +2

Query: 5   KVRAIYNMGPRESLKNKFPEYDILT 79
           K RAIYN    E LK+  PE D  T
Sbjct: 59  KKRAIYNQFGEEGLKSGVPEKDAWT 83


>SB_47014| Best HMM Match : rve (HMM E-Value=6.8e-21)
          Length = 752

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = -1

Query: 116 YALSYRRCIGRVKLRYHILGTCSLEIREVPYCILLELY 3
           YA   + C+  ++L +  + +  LE++   Y +L++LY
Sbjct: 560 YAQIEKECLAILQLPWQAVASDCLEVQGEHYLVLVDLY 597


>SB_13883| Best HMM Match : 7tm_1 (HMM E-Value=6e-08)
          Length = 535

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 104 NLMHIRKNLDKLDRVNDRHNFNIRSKDKLAVPRF 205
           NL  +RK+ D  DR+   H+ ++ S     +P F
Sbjct: 14  NLTELRKHFDNTDRI---HSLDLSSNQLKIIPEF 44


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,071,766
Number of Sequences: 59808
Number of extensions: 94260
Number of successful extensions: 243
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 16,821,457
effective HSP length: 56
effective length of database: 13,472,209
effective search space used: 296388598
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)