Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_F06
(236 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81142-7|CAB03509.2| 481|Caenorhabditis elegans Hypothetical pr... 25 5.4
AY008141-1|AAG32094.1| 375|Caenorhabditis elegans heterotrimeri... 25 5.4
AF039715-1|AAB96733.2| 375|Caenorhabditis elegans G protein, su... 25 5.4
AB003487-1|BAA22402.1| 375|Caenorhabditis elegans G protein alp... 25 5.4
AB003486-1|BAA22401.1| 375|Caenorhabditis elegans G protein a(s... 25 5.4
AF016670-4|AAB66105.2| 232|Caenorhabditis elegans Hypothetical ... 25 7.2
AF016670-3|AAB66106.1| 232|Caenorhabditis elegans Hypothetical ... 25 7.2
Z82272-8|CAB05223.1| 337|Caenorhabditis elegans Hypothetical pr... 25 9.5
Z82260-13|CAB05143.1| 337|Caenorhabditis elegans Hypothetical p... 25 9.5
Z81568-11|CAB04593.1| 681|Caenorhabditis elegans Hypothetical p... 25 9.5
>Z81142-7|CAB03509.2| 481|Caenorhabditis elegans Hypothetical
protein ZK1037.10 protein.
Length = 481
Score = 25.4 bits (53), Expect = 5.4
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 86 SQYIFDNLMHIRKNLDKLDRV 148
SQY FD + +I KN+D+ ++
Sbjct: 171 SQYAFDYISNIAKNIDEYGKI 191
>AY008141-1|AAG32094.1| 375|Caenorhabditis elegans heterotrimeric G
protein alphasubunit protein.
Length = 375
Score = 25.4 bits (53), Expect = 5.4
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 35 RESLKNKFPEYDILTLPSQYIFDN 106
R L++ FPE++ LP+ +FDN
Sbjct: 286 RYLLESFFPEFEGYNLPNDAVFDN 309
>AF039715-1|AAB96733.2| 375|Caenorhabditis elegans G protein,
subunit alpha protein 1 protein.
Length = 375
Score = 25.4 bits (53), Expect = 5.4
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 35 RESLKNKFPEYDILTLPSQYIFDN 106
R L++ FPE++ LP+ +FDN
Sbjct: 286 RYLLESFFPEFEGYNLPNDAVFDN 309
>AB003487-1|BAA22402.1| 375|Caenorhabditis elegans G protein alpha
subunit protein.
Length = 375
Score = 25.4 bits (53), Expect = 5.4
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 35 RESLKNKFPEYDILTLPSQYIFDN 106
R L++ FPE++ LP+ +FDN
Sbjct: 286 RYLLESFFPEFEGYNLPNDAVFDN 309
>AB003486-1|BAA22401.1| 375|Caenorhabditis elegans G protein a(s)
subunit protein.
Length = 375
Score = 25.4 bits (53), Expect = 5.4
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 35 RESLKNKFPEYDILTLPSQYIFDN 106
R L++ FPE++ LP+ +FDN
Sbjct: 286 RYLLESFFPEFEGYNLPNDAVFDN 309
>AF016670-4|AAB66105.2| 232|Caenorhabditis elegans Hypothetical
protein K02F6.5 protein.
Length = 232
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +2
Query: 53 KFPEYDILTLPSQYIFDNLMHIRKNL 130
K ++IL+LPS Y FD+ ++ K++
Sbjct: 140 KLGNHNILSLPSVYTFDDYVNYLKSV 165
>AF016670-3|AAB66106.1| 232|Caenorhabditis elegans Hypothetical
protein K02F6.8 protein.
Length = 232
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +2
Query: 53 KFPEYDILTLPSQYIFDNLMHIRKNL 130
K ++IL+LPS Y FD+ ++ K++
Sbjct: 140 KLGNHNILSLPSVYTFDDYVNYLKSV 165
>Z82272-8|CAB05223.1| 337|Caenorhabditis elegans Hypothetical
protein F55G11.1 protein.
Length = 337
Score = 24.6 bits (51), Expect = 9.5
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -1
Query: 119 EYALSYRRCIGRVKLRYHILGTCSLEIREVPYCILL 12
+Y L+ CIG L I L+ EVP+C LL
Sbjct: 146 KYWLALIGCIGYSVLSAFIQSRSLLQYGEVPFCDLL 181
>Z82260-13|CAB05143.1| 337|Caenorhabditis elegans Hypothetical
protein F55G11.1 protein.
Length = 337
Score = 24.6 bits (51), Expect = 9.5
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -1
Query: 119 EYALSYRRCIGRVKLRYHILGTCSLEIREVPYCILL 12
+Y L+ CIG L I L+ EVP+C LL
Sbjct: 146 KYWLALIGCIGYSVLSAFIQSRSLLQYGEVPFCDLL 181
>Z81568-11|CAB04593.1| 681|Caenorhabditis elegans Hypothetical
protein K08E3.6 protein.
Length = 681
Score = 24.6 bits (51), Expect = 9.5
Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +2
Query: 11 RAIYNMGPRESLKNKFPEYDILTLPSQYIFDNLMHIRKNLDKLDRVNDRHNFNIR-SKDK 187
R I+NM L ++ P++DI + ++ D + +RK + R N ++R +++
Sbjct: 16 RHIFNM----ILNSQRPQFDIKDIGMFHLIDEIERLRKLWKDSEESKKRLNADMREAEEA 71
Query: 188 LAVPRFRLS 214
LA R +L+
Sbjct: 72 LAKARKKLA 80
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,610,314
Number of Sequences: 27780
Number of extensions: 77284
Number of successful extensions: 232
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 12,740,198
effective HSP length: 58
effective length of database: 11,128,958
effective search space used: 222579160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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