Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_F06
         (236 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   1.5  
M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee preprosec...    21   2.0  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    19   6.2  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       19   8.3  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 1.5
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +2

Query: 89  QYIFDNLMHIRKNLDKLDRVNDRHNFNIRSKDKLAVPRFR 208
           ++ F N ++ RK    L +VN ++        KLA  +F+
Sbjct: 311 EFAFVNTIYRRKKTVPLKKVNSKYILKSTLTPKLARKQFQ 350


>M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee
           preprosecapin mRNA, complete cds. ).
          Length = 77

 Score = 21.0 bits (42), Expect = 2.0
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 149 NDRHNFNIRSKDKLAVPRF 205
           NDR +   RS D +  PR+
Sbjct: 35  NDRQSLEARSADLVPEPRY 53


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 19.4 bits (38), Expect = 6.2
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -1

Query: 137 ACLNFYEYALSY 102
           ACL+ Y YA+S+
Sbjct: 321 ACLDPYVYAISH 332


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 19.0 bits (37), Expect = 8.3
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 95  IFDNLMHIRKNLDKLDRV 148
           +F+N + I  N DK D +
Sbjct: 165 LFENGVEIGINFDKYDNI 182


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,567
Number of Sequences: 438
Number of extensions: 1001
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  3898467
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)