Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_F06
         (236 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g17930.1 68418.m02102 MA3 domain-containing protein low simil...    29   0.33 
At3g51730.1 68416.m05672 saposin B domain-containing protein con...    29   0.33 
At5g11510.1 68418.m01343 myb family transcription factor (MYB3R4...    27   2.3  
At2g25930.1 68415.m03112 hydroxyproline-rich glycoprotein family...    27   2.3  
At2g07749.1 68415.m00892 hypothetical protein contains Pfam prof...    26   4.0  
At1g17860.1 68414.m02210 trypsin and protease inhibitor family p...    26   4.0  
At4g13040.1 68417.m02035 AP2 domain-containing transcription fac...    25   5.3  
At2g01370.1 68415.m00055 DNA-binding storekeeper protein-related...    25   5.3  
At1g53920.1 68414.m06138 GDSL-motif lipase/hydrolase family prot...    25   7.1  
At2g38920.1 68415.m04784 SPX (SYG1/Pho81/XPR1) domain-containing...    25   9.3  

>At5g17930.1 68418.m02102 MA3 domain-containing protein low
           similarity to SP|Q9P6R9 Cell cycle control protein cwf22
           {Schizosaccharomyces pombe}; contains Pfam profile
           PF02847: MA3 domain
          Length = 707

 Score = 29.5 bits (63), Expect = 0.33
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
 Frame = +2

Query: 86  SQYIFDNLMHIRKNLDKLDR-----VNDRHNFNIRSKDKLAVPRFRLSKSNKS 229
           S  I+D LM + K L K+D      V D     IRS D LA+  F +S  NK+
Sbjct: 338 SDLIYDFLMTLGKRLTKVDAFTITTVLDCCGMKIRSDDPLAMKTFIISIQNKA 390


>At3g51730.1 68416.m05672 saposin B domain-containing protein
           contains Pfam profiles: PF00026 eukaryotic aspartyl
           protease, PF03489 surfactant protein B, PF05184
           saposin-like type B, region 1
          Length = 213

 Score = 29.5 bits (63), Expect = 0.33
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = +2

Query: 2   SKVRAIYNMGPRESLKNKFPEYDILTLPSQYIFDNLMHIRKNLDKLDRVNDRHN 163
           S  R+  +    E + NK    D+ TL  +Y+ D L ++ KN+ + + + D H+
Sbjct: 19  SDARSFVDSTISEKVSNK---EDVCTLCEEYVTDALSYLEKNVTQAEIIEDLHD 69


>At5g11510.1 68418.m01343 myb family transcription factor (MYB3R4)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 961

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +2

Query: 101 DNLMHIRKNLDKLDRVNDRHNFNIRSKD 184
           +  MHIRK+L+K+D++      N+R KD
Sbjct: 711 EETMHIRKSLEKVDQI--CMEANVREKD 736


>At2g25930.1 68415.m03112 hydroxyproline-rich glycoprotein family
           protein identical to cDNA nematode responsive protein
           GI:2213418
          Length = 695

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +2

Query: 29  GPRESLKNKFPEYDILTLPSQYIFDN-LMHIRKN 127
           GPR   +NK   Y+ L++PSQ   D+  M+ R N
Sbjct: 27  GPRAPPRNKMALYEQLSIPSQRFGDHGTMNSRSN 60


>At2g07749.1 68415.m00892 hypothetical protein contains Pfam profile
           PF05919: Mitovirus RNA-dependent RNA polymerase
          Length = 246

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 122 YEYALSYRRCIGRVKLRYHILGTCSLEIREVP 27
           Y+Y LS + C+   K  Y +LG     +R  P
Sbjct: 202 YKYKLSPKTCLRLNKAGYRVLGQMDTTLRPYP 233


>At1g17860.1 68414.m02210 trypsin and protease inhibitor family
           protein / Kunitz family protein similar to LeMir
           (miraculin homolog) GI:2654440 from [Lycopersicon
           esculentum], tumor-related protein [Nicotiana tabacum]
           GI:1762933; contains Pfam profile PF00197: Trypsin and
           protease inhibitor
          Length = 196

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 3   VKFEQYTIWDLANL*RTSSQNMIS 74
           +KF   +IW+LAN   T+ Q  IS
Sbjct: 102 IKFSPTSIWELANFDETTKQWFIS 125


>At4g13040.1 68417.m02035 AP2 domain-containing transcription factor
           family protein contains Pfam profile PF00847: AP2 domain
          Length = 226

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = +2

Query: 11  RAIYNMGPRESLKNKFPEYDILTLPSQYIFDNLMHIRKNLDKLDRVN 151
           RA YN GP E++     E   +   S+      MH R +   +  VN
Sbjct: 41  RAAYNPGPAETVTTVIVEKKAIEERSRRTRSKHMHFRSDYSDISPVN 87


>At2g01370.1 68415.m00055 DNA-binding storekeeper protein-related
           contains Pfam PF04504: Protein of unknown function,
           DUF573; similar to storekeeper protein GI:14268476
           [Solanum tuberosum]
          Length = 252

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 120 RICIKLSKMYWEGKVKISYSGNLF 49
           R C +LSK+ WE   K+   G+ F
Sbjct: 161 RKCFQLSKVIWEPTTKVEEVGDWF 184


>At1g53920.1 68414.m06138 GDSL-motif lipase/hydrolase family protein
           similar to Anther-specific proline-rich proteins
           SP|P40603 SP|P40602 from {Arabidopsis thaliana};
           contains Pfam profile PF00657: GDSL-like
           Lipase/Acylhydrolase
          Length = 385

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +2

Query: 5   KVRAIYNMGPRESLKNKFPEYDILTLPSQYIFDNLMHIRKN 127
           K R +++ G +  +K    EY +   P  YIF + +H+ +N
Sbjct: 316 KWRGVFSCGGKRIVK----EYQLCENPKDYIFWDSLHLTQN 352


>At2g38920.1 68415.m04784 SPX (SYG1/Pho81/XPR1) domain-containing
           protein / zinc finger (C3HC4-type RING finger)
           protein-related weak similarity to tripartite motif
           protein TRIM13 [Mus musculus] GI:12407427; contains Pfam
           profile PF03105: SPX domain, weak hit to PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 335

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 89  QYIFDNLMHIRKNLDKLDRVNDRHN 163
           QYI  N + IRK L K D+V+   N
Sbjct: 133 QYITMNAIAIRKILKKYDKVHSSEN 157


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,310,196
Number of Sequences: 28952
Number of extensions: 68581
Number of successful extensions: 170
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 12,070,560
effective HSP length: 57
effective length of database: 10,420,296
effective search space used: 218826216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)