Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_F05
         (364 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4Z0K3 Cluster: Carbon monoxide dehydrogenase, coxF acc...    31   4.8  
UniRef50_A5TXJ9 Cluster: Possible bacteriophage resistance prote...    31   8.3  
UniRef50_A7TF45 Cluster: Tkp3 protein; n=3; Vanderwaltozyma poly...    31   8.3  

>UniRef50_A4Z0K3 Cluster: Carbon monoxide dehydrogenase, coxF
           accessory protein; n=4; Alphaproteobacteria|Rep: Carbon
           monoxide dehydrogenase, coxF accessory protein -
           Bradyrhizobium sp. (strain ORS278)
          Length = 271

 Score = 31.5 bits (68), Expect = 4.8
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -1

Query: 226 SSPCVSIKAKPITDRLIKGLSLDGVAG 146
           ++P   + A P  DRLI G +LDG+AG
Sbjct: 153 AAPAADLVATPEADRLIDGFTLDGLAG 179


>UniRef50_A5TXJ9 Cluster: Possible bacteriophage resistance protein;
           n=1; Fusobacterium nucleatum subsp. polymorphum ATCC
           10953|Rep: Possible bacteriophage resistance protein -
           Fusobacterium nucleatum subsp. polymorphum ATCC 10953
          Length = 301

 Score = 30.7 bits (66), Expect = 8.3
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = +2

Query: 239 TNHLADDDLLFKIHKTYYRISYRLVTLLLPQ*SRTMQEND 358
           T HL+D++ L++I  TYY IS   +T  + Q   +M+E +
Sbjct: 247 TKHLSDEEKLYQIPITYYNISELDITKEIEQKFVSMKEKE 286


>UniRef50_A7TF45 Cluster: Tkp3 protein; n=3; Vanderwaltozyma
           polyspora DSM 70294|Rep: Tkp3 protein - Vanderwaltozyma
           polyspora DSM 70294
          Length = 704

 Score = 30.7 bits (66), Expect = 8.3
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +3

Query: 147 PATPSRLRPFINRSVMGFAFILTHGELHS*EQIILPMMIFCLRFTKLTIEYRT 305
           P  P+ +  F + S+ G A I+   E H+ +QI+ P+    +RFT     Y T
Sbjct: 42  PTAPTII--FTDASLTGGASIIFQPETHNKKQILFPITFLSVRFTPTQQRYST 92


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 259,982,633
Number of Sequences: 1657284
Number of extensions: 3588495
Number of successful extensions: 6580
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6580
length of database: 575,637,011
effective HSP length: 90
effective length of database: 426,481,451
effective search space used: 12794443530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)