Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_F05
         (364 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC713.08 |tom13||mitochondrial TOM complex subunit Tom13|Schiz...    25   3.6  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    25   4.8  
SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|c...    24   6.3  

>SPBC713.08 |tom13||mitochondrial TOM complex subunit
           Tom13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 71

 Score = 25.0 bits (52), Expect = 3.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 171 PFINRSVMGFAFILTHGELHS 233
           PF+N  ++GF  I  H  +HS
Sbjct: 30  PFLNGVMLGFGEIFAHAFIHS 50


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 11/46 (23%), Positives = 26/46 (56%)
 Frame = +3

Query: 159  SRLRPFINRSVMGFAFILTHGELHS*EQIILPMMIFCLRFTKLTIE 296
            S++R   N+S++ F  ++++ E+ +    +L  +  C R+T   +E
Sbjct: 1536 SQVRNTANKSLLRFGDVISNPEIQTLVPTLLKALSDCTRYTDDALE 1581


>SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 489

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = -3

Query: 344 LFLITVVAAKLLICTIFDSKFCES*TKDHHRQDDLFL 234
           +FL  + A++L++ +IF  +     TK+H   D  ++
Sbjct: 422 IFLFVMCASQLIMTSIFGKETDRLSTKEHFTDDKSYI 458


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,067,389
Number of Sequences: 5004
Number of extensions: 15760
Number of successful extensions: 42
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)