Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_F04
(406 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 232 7e-62
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 228 2e-60
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 228 2e-60
SB_56| Best HMM Match : Actin (HMM E-Value=0) 226 5e-60
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 225 1e-59
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 183 6e-47
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 92 2e-19
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 60 9e-10
SB_54| Best HMM Match : Actin (HMM E-Value=0) 60 9e-10
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 56 8e-09
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 55 2e-08
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 49 2e-06
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 6e-04
SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.27
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 31 0.27
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.62
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 30 0.82
SB_40639| Best HMM Match : CAP_GLY (HMM E-Value=0) 28 2.5
SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.5
SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.5
SB_49135| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.5
SB_3368| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.4
SB_52691| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.4
SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24) 27 5.8
SB_42812| Best HMM Match : RVT_1 (HMM E-Value=8.4e-19) 27 5.8
SB_11543| Best HMM Match : Synaptobrevin (HMM E-Value=0.00034) 27 5.8
SB_28982| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.7
SB_40493| Best HMM Match : ShTK (HMM E-Value=3.2e-09) 27 7.7
SB_14023| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.7
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 232 bits (568), Expect = 7e-62
Identities = 104/106 (98%), Positives = 106/106 (100%)
Frame = +3
Query: 87 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 266
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 267 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 404
SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 106
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 228 bits (557), Expect = 2e-60
Identities = 103/106 (97%), Positives = 105/106 (99%)
Frame = +3
Query: 87 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 266
M D+E+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 267 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 404
SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 106
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 228 bits (557), Expect = 2e-60
Identities = 101/106 (95%), Positives = 105/106 (99%)
Frame = +3
Query: 87 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 266
M D+++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 267 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 404
SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 106
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 226 bits (553), Expect = 5e-60
Identities = 102/104 (98%), Positives = 104/104 (100%)
Frame = +3
Query: 93 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 272
++EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 273 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 404
RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 105
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 225 bits (550), Expect = 1e-59
Identities = 101/104 (97%), Positives = 104/104 (100%)
Frame = +3
Query: 93 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 272
+++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 273 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 404
RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 105
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 183 bits (445), Expect = 6e-47
Identities = 83/89 (93%), Positives = 86/89 (96%)
Frame = +3
Query: 93 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 272
D++VAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 273 RGILTLKYPIEHGIVTNWDDMEKIWHHTF 359
RGILTLKYPIEHGIVTNWDDMEKI TF
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIMFETF 90
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 91.9 bits (218), Expect = 2e-19
Identities = 44/103 (42%), Positives = 65/103 (63%), Gaps = 3/103 (2%)
Frame = +3
Query: 105 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRG 278
+ +V DNG+G K G+AG + P +FPS+VGRP R + + KD VGDEA R
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGDIEVKDLMVGDEASQLRY 66
Query: 279 ILTLKYPIEHGIVTNWDDMEKIWHHTF-YNELRVAPEEHPVLL 404
+L + YP+++GIV NWDDM+ +W +TF +++ + P VLL
Sbjct: 67 MLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPRNTKVLL 109
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 59.7 bits (138), Expect = 9e-10
Identities = 27/39 (69%), Positives = 29/39 (74%)
Frame = +3
Query: 96 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 212
E LV+D GS M K GFAGDDAP+ VFP IVGRPRHQ
Sbjct: 1354 EAPTPLVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRHQ 1392
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 59.7 bits (138), Expect = 9e-10
Identities = 23/34 (67%), Positives = 30/34 (88%)
Frame = +3
Query: 111 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 212
+V+DNGSG CKAG + D++PR VFP+IVGRPRH+
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHK 2130
Score = 27.5 bits (58), Expect = 4.4
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 339 KIWHHTFYNELRVAPEEHPVLL 404
K+W H F ++LRV E+ PVLL
Sbjct: 2130 KMWEHAF-DQLRVRGEDFPVLL 2150
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 56.4 bits (130), Expect = 8e-09
Identities = 26/60 (43%), Positives = 34/60 (56%)
Frame = +3
Query: 225 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 404
G+ D ++GDEA K T K+PI H IV +WD ME+ W + LR PE+H LL
Sbjct: 278 GVEDLDFFIGDEAIDKPSYAT-KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDHYFLL 336
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 55.2 bits (127), Expect = 2e-08
Identities = 27/64 (42%), Positives = 41/64 (64%), Gaps = 3/64 (4%)
Frame = +3
Query: 108 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKD-SYVGDEAQSKRG 278
A+V+DNG G+ K GFAGD PR + P++VG P+ +++G + KD GD A +K G
Sbjct: 702 AIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSMLIGDNVNVKDYKKYGDAAVAKSG 761
Query: 279 ILTL 290
++ L
Sbjct: 762 VMHL 765
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 48.8 bits (111), Expect = 2e-06
Identities = 27/92 (29%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
Frame = +3
Query: 99 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 278
++A LV+D G+ K GFA + APR++ P+ + + + + ++ ++GD+ + +
Sbjct: 232 KMATLVLDCGACSQKIGFASNQAPRSI-PNAIFKAKSE-------RRKLFIGDQIEECKD 283
Query: 279 ILTLKY--PIEHGIVTNWDDMEKIWHHTFYNE 368
L Y P + G + NWD ++IW +TF E
Sbjct: 284 YSALFYVLPFQKGFLVNWDVEKQIWDYTFGKE 315
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 40.3 bits (90), Expect = 6e-04
Identities = 18/39 (46%), Positives = 27/39 (69%)
Frame = -3
Query: 209 VTRSPHDRGKYGAGSVVSRETGFAHSGPIVYDQRGNFLV 93
+ RS D G+ G+GS+VS ETG AH+G I+ +Q + +V
Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39
>SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 31.5 bits (68), Expect = 0.27
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -1
Query: 184 GNTARGASSPAKPALHIPDPLSTT 113
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 31.5 bits (68), Expect = 0.27
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -1
Query: 184 GNTARGASSPAKPALHIPDPLSTT 113
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 30.3 bits (65), Expect = 0.62
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -1
Query: 184 GNTARGASSPAKPALHIPDPLSTT 113
GNT R PAKP+L++P P S T
Sbjct: 540 GNTNRRTRIPAKPSLNLPSPPSKT 563
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 29.9 bits (64), Expect = 0.82
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +3
Query: 297 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 404
PI+ G++ +WD EKI + + ++ HP+L+
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLM 38
>SB_40639| Best HMM Match : CAP_GLY (HMM E-Value=0)
Length = 709
Score = 28.3 bits (60), Expect = 2.5
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = +2
Query: 203 SSPGRHGRHGSEGLLRR**GTEQEGYPHTQIPHRTRHRH 319
S G HGR G+EG L R EQ + TRH H
Sbjct: 134 SCGGIHGREGTEGKLNRNRKPEQGTGKRNMMLAETRHTH 172
>SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 28.3 bits (60), Expect = 2.5
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -1
Query: 184 GNTARGASSPAKPALHIPDPLSTT 113
GNT R AKPAL++P P S T
Sbjct: 40 GNTNRRTRIQAKPALNLPSPPSKT 63
>SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 28.3 bits (60), Expect = 2.5
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -1
Query: 184 GNTARGASSPAKPALHIPDPLSTT 113
GNT R PAKP L IP P + T
Sbjct: 68 GNTNRRTRIPAKPTLTIPSPPTKT 91
>SB_49135| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 824
Score = 28.3 bits (60), Expect = 2.5
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -3
Query: 341 LLHIVPVGDDAVFDGVFECEDTPLALCLITYVGVLLT 231
LL +VP D + + + E ED L CL +GV T
Sbjct: 310 LLKLVPNLDTCIEESLTESEDVELGRCLYNNIGVQCT 346
>SB_3368| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 477
Score = 27.5 bits (58), Expect = 4.4
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 278 YPHTQIPHRTRHRHQLGRYGEDLASHLLQ 364
Y H Q+P+ TR H RY + ++ H L+
Sbjct: 41 YKHAQVPNSTRTLHL--RYSQQISPHFLE 67
>SB_52691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 38
Score = 27.5 bits (58), Expect = 4.4
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 393 GAPRELHAAHCRRCDARSSPYRPSW 319
G R AA C++CDARS +P W
Sbjct: 3 GVLRVQLAARCKKCDARSD-IKPEW 26
>SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24)
Length = 766
Score = 27.1 bits (57), Expect = 5.8
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +3
Query: 105 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH 209
+ +++D GS KAGFA ++A + + S++G H
Sbjct: 483 SVIIIDLGSSSVKAGFAQEEA-QVFYISLIGILEH 516
>SB_42812| Best HMM Match : RVT_1 (HMM E-Value=8.4e-19)
Length = 769
Score = 27.1 bits (57), Expect = 5.8
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -3
Query: 344 DLLHIVPVGDDAVFDGVFECEDTPLALCLITYVGVLL 234
D L +PVG DA FDG + DT +C T + ++
Sbjct: 320 DALSRLPVGPDAQFDGKEDSADTD-CICTKTVLATVM 355
>SB_11543| Best HMM Match : Synaptobrevin (HMM E-Value=0.00034)
Length = 629
Score = 27.1 bits (57), Expect = 5.8
Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = +1
Query: 97 RKLPRWS*TMGPECAKPVSR-ETTLPAPYFPRSWGDLVTR 213
R++PR S M P A+PVS+ +++P+P P+ G V+R
Sbjct: 296 REVPRLSHQMSP-AAEPVSQLMSSIPSPGMPQGAGHGVSR 334
>SB_28982| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1287
Score = 26.6 bits (56), Expect = 7.7
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +1
Query: 121 TMGPECAKPVSRETTLPAPYFPRSW 195
T GP A+ S+E P P+F W
Sbjct: 382 TQGPSVARQNSKEDVTPRPWFLEMW 406
>SB_40493| Best HMM Match : ShTK (HMM E-Value=3.2e-09)
Length = 207
Score = 26.6 bits (56), Expect = 7.7
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +1
Query: 22 VWNRCGYCQFSRYLNYLPTNSQCATRKLP 108
+W + GYCQF++++ C K P
Sbjct: 71 LWEKLGYCQFAKHIMKRFCRKTCGFCKAP 99
>SB_14023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 283
Score = 26.6 bits (56), Expect = 7.7
Identities = 10/31 (32%), Positives = 14/31 (45%)
Frame = +1
Query: 154 RETTLPAPYFPRSWGDLVTRASWSAWVRRTP 246
RE +P +W SW+AWV + P
Sbjct: 252 REQPIPQQVDVSTWNKPFCNRSWTAWVEKKP 282
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,102,037
Number of Sequences: 59808
Number of extensions: 321979
Number of successful extensions: 931
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 727815563
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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