Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_F04
         (406 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   2.3  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   4.0  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   4.0  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   5.3  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   5.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   7.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   9.3  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -3

Query: 371 QLIVEGVMPDLLHIV 327
           Q +V+ V PD+LH++
Sbjct: 23  QTVVDKVPPDMLHLI 37


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 200 TSSPGRHGRHGSEGL 244
           T+  G HG HG  GL
Sbjct: 129 TNQTGLHGLHGLHGL 143


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 132 GMCKAGFAGD 161
           GMCK G +GD
Sbjct: 130 GMCKEGISGD 139


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +1

Query: 28  NRCGYCQFSRYL 63
           NRC YC++ + L
Sbjct: 160 NRCQYCRYQKCL 171


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +1

Query: 28  NRCGYCQFSRYL 63
           NRC YC++ + L
Sbjct: 160 NRCQYCRYQKCL 171


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 10/36 (27%), Positives = 16/36 (44%)
 Frame = +2

Query: 275  GYPHTQIPHRTRHRHQLGRYGEDLASHLLQ*AACSS 382
            GY H    H T HR Q+    + +   +    +C+S
Sbjct: 1678 GYHHNVNKHCTIHRTQVKETDDKICFTMRPVVSCAS 1713


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 5/15 (33%), Positives = 10/15 (66%)
 Frame = +2

Query: 275  GYPHTQIPHRTRHRH 319
            G PH+ + ++ + RH
Sbjct: 1070 GVPHSTLEYKVKERH 1084


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,393
Number of Sequences: 438
Number of extensions: 2546
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10132494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)