Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_F03
         (379 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein S26|Schizosa...   158   2e-40
SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein S26|Sc...   153   1e-38
SPCC126.15c |sec65||signal recognition particle subunit Sec65 |S...    29   0.32 
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    27   1.3  
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    25   3.0  
SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein homolog|Schizos...    25   3.9  
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos...    25   3.9  
SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr...    25   5.2  
SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|c...    24   6.9  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    24   9.1  
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    24   9.1  

>SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 119

 Score =  158 bits (384), Expect = 2e-40
 Identities = 70/97 (72%), Positives = 84/97 (86%)
 Frame = +2

Query: 35  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINEASVYT 214
           MT+KRRN GR KHGRGHVK VRC NC+R VPKDKAIK++ IRN+VE AA+RD++EASVY+
Sbjct: 1   MTQKRRNNGRNKHGRGHVKFVRCINCSRAVPKDKAIKRWTIRNMVETAAIRDLSEASVYS 60

Query: 215 SFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTP 325
            + +PKLY KL YCVSCAIHS+VVR RS++ RRIRTP
Sbjct: 61  EYTIPKLYIKLQYCVSCAIHSRVVRVRSREGRRIRTP 97


>SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 120

 Score =  153 bits (370), Expect = 1e-38
 Identities = 67/97 (69%), Positives = 83/97 (85%)
 Frame = +2

Query: 35  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINEASVYT 214
           MT+KRRN GR KHGRGH K VRC NC+R VPKDKAIK++ IRN+VE AA+RD++EASVY+
Sbjct: 1   MTQKRRNCGRNKHGRGHTKFVRCINCSRAVPKDKAIKRWNIRNMVETAAIRDLSEASVYS 60

Query: 215 SFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTP 325
            + +PK+Y KL YCVSCAIH++VVR RS++ RRIRTP
Sbjct: 61  EYAIPKIYVKLQYCVSCAIHARVVRVRSREGRRIRTP 97


>SPCC126.15c |sec65||signal recognition particle subunit Sec65
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 199

 Score = 28.7 bits (61), Expect = 0.32
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = +2

Query: 116 RCVPKDKAIKKFVIRNIVEAAAVRDI 193
           RCVPKDKAI   + +NI  A  VRD+
Sbjct: 20  RCVPKDKAILNPLAKNI--ADVVRDL 43


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +1

Query: 163 YC*SCRCEGHKRSLSIYFIPTSQAVCKTPLL 255
           +C +C    H+    I F+P  Q  CK  LL
Sbjct: 213 FCDNCNTSVHQNCYGIPFVPEGQWFCKKCLL 243


>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
            Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 287  APLCYGSRMTRSSGVLHTAWEVGMKYILRLRL 192
            +P+  G +MT S   + T ++ G +    LRL
Sbjct: 954  SPMSQGDKMTSSESTVSTTYDFGFEAAYNLRL 985


>SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 196

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +3

Query: 237 MQNSTTACHARSI-AKWCVTDLRRTGGSVHXPRATSQG 347
           M+ + +   AR +  KW + + RR  GSV   RA   G
Sbjct: 1   METNGSFSGARLVDGKWIIPESRRKDGSVRRERAVKPG 38


>SPBC409.12c |||nuclear telomere cap complex subunit
           Stn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +2

Query: 314 IRTPXKSNFPRDMAR 358
           IRTP KS FP+D A+
Sbjct: 157 IRTPKKSYFPKDHAK 171


>SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 327

 Score = 24.6 bits (51), Expect = 5.2
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +1

Query: 127 QRQSHQKVCDQEYC*SCRCEGHKRSLSIYFIPTSQAV 237
           ++QSH ++   + C S    GH    ++YF  + Q +
Sbjct: 51  RQQSHSRITISKQCVSWIGNGHAAETTLYFPASHQQI 87


>SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -1

Query: 331 LGWCTDPPVLLRSVTHHFAMDRA*HAVVEFCIQLGK 224
           +G     PV     T H ++++  HAV+  C +L +
Sbjct: 136 VGQILQVPVFPEESTFHLSIEQYLHAVLSLCSELAR 171


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 231 SCMQNSTTACHARSIAKWCVTDL 299
           SCM+N   A   R I K+  TDL
Sbjct: 62  SCMRNEEPASKQREIEKFLRTDL 84


>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +2

Query: 29  RNMTRKRRNGGRAKHG 76
           R   R RR  GRAKHG
Sbjct: 378 REARRMRRRQGRAKHG 393


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,406,732
Number of Sequences: 5004
Number of extensions: 24523
Number of successful extensions: 73
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)