Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_F03
         (379 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1177 + 35147036-35147038,35147128-35147220,35147322-351474...   153   4e-38
06_02_0037 - 10856616-10856915,10857527-10860238                       28   2.8  
11_01_0564 - 4447078-4448519,4449465-4449711                           27   3.7  
09_04_0040 - 14029565-14029810,14030904-14031182,14032056-14032832     27   6.5  
07_01_0024 + 159839-159923,160395-160442,160884-160895,161347-16...    27   6.5  

>01_06_1177 +
           35147036-35147038,35147128-35147220,35147322-35147406,
           35147588-35147760
          Length = 117

 Score =  153 bits (371), Expect = 4e-38
 Identities = 66/97 (68%), Positives = 82/97 (84%)
 Frame = +2

Query: 35  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINEASVYT 214
           MT KRRNGGR KHGRGHVK +RC+NCA+C PKDKAIK+F +RNIVE AA+RD+ EA V+ 
Sbjct: 1   MTFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFQVRNIVEQAAIRDVQEACVHD 60

Query: 215 SFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTP 325
            + LPKLYAK+H+CVSCAIH+ +VR RS+++RR R P
Sbjct: 61  GYVLPKLYAKVHHCVSCAIHAHIVRVRSRENRRDRRP 97


>06_02_0037 - 10856616-10856915,10857527-10860238
          Length = 1003

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -2

Query: 240 AYSLGSWNEVYTEASFMSLTAAASTIFLITNFLMALSL 127
           AY+ GSW ++    S   L AA   + ++T  +   SL
Sbjct: 525 AYAAGSWRDIGASLSIFVLVAAIIVLLVVTYIVSCKSL 562


>11_01_0564 - 4447078-4448519,4449465-4449711
          Length = 562

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 11/36 (30%), Positives = 15/36 (41%)
 Frame = +3

Query: 225 FPSCMQNSTTACHARSIAKWCVTDLRRTGGSVHXPR 332
           F  CM+          + KW V D+   GGS   P+
Sbjct: 334 FSKCMEAMENCLRDAKVDKWSVDDVVLVGGSTRIPK 369


>09_04_0040 - 14029565-14029810,14030904-14031182,14032056-14032832
          Length = 433

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 15/50 (30%), Positives = 20/50 (40%)
 Frame = +2

Query: 38  TRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVR 187
           T  RR    A  G G   AV C +CA   P + A+   +   +  A   R
Sbjct: 78  TSSRRTDPPAGAGAGEDDAVACPSCAEPFPSELAVSDHLDGCLAAAGGAR 127


>07_01_0024 + 159839-159923,160395-160442,160884-160895,161347-161427,
            161530-161675,161918-161965,162054-162203,165647-165706,
            165788-165859,165960-166409,166640-166839,167239-168236,
            168676-168683,169057-169230,169341-169659,169748-169824,
            169897-169966,170040-170111,170204-170418,170540-170665,
            170751-171046,171133-171157,171163-171303,171400-171498,
            171571-171702,171793-171912
          Length = 1407

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
 Frame = +3

Query: 204  QYILHSNFPSCMQ----NSTTACHARSIAKWCVTDLRRTGGSV--HXPR 332
            +Y+ HS FP C +     +    +A+++ K    DL  TGG +  H PR
Sbjct: 1143 EYLGHSTFPDCCKVLCTQTDNLYNAKNMLKSNNLDLSSTGGKLPPHGPR 1191


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,922,402
Number of Sequences: 37544
Number of extensions: 184391
Number of successful extensions: 550
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)