Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_F03
         (379 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13168| Best HMM Match : Ribosomal_S26e (HMM E-Value=0)             182   9e-47
SB_973| Best HMM Match : No HMM Matches (HMM E-Value=.)                35   0.025
SB_21203| Best HMM Match : MFS_1 (HMM E-Value=0.0055)                  29   1.7  
SB_25340| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.9  
SB_19355| Best HMM Match : MFS_1 (HMM E-Value=1.8e-22)                 27   3.8  
SB_22744| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.1  
SB_45447| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  
SB_33535| Best HMM Match : RVT_1 (HMM E-Value=1.4013e-45)              27   6.7  
SB_21286| Best HMM Match : DUF352 (HMM E-Value=0.47)                   27   6.7  
SB_49331| Best HMM Match : DUF352 (HMM E-Value=0.47)                   27   6.7  
SB_48616| Best HMM Match : RVT_1 (HMM E-Value=2.8e-26)                 27   6.7  
SB_32319| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  
SB_39567| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.8  
SB_33968| Best HMM Match : Transformer (HMM E-Value=5.1)               26   8.8  
SB_53084| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.8  
SB_49978| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.8  
SB_41634| Best HMM Match : DUF1518 (HMM E-Value=5.9)                   26   8.8  
SB_27417| Best HMM Match : zf-CCHC (HMM E-Value=0.00021)               26   8.8  
SB_18778| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.8  
SB_15389| Best HMM Match : zf-CCHC (HMM E-Value=0.00021)               26   8.8  

>SB_13168| Best HMM Match : Ribosomal_S26e (HMM E-Value=0)
          Length = 289

 Score =  182 bits (443), Expect = 9e-47
 Identities = 83/97 (85%), Positives = 90/97 (92%)
 Frame = +2

Query: 35  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINEASVYT 214
           MT+KR NGGR+KHGRGHVK VRCTNCARCVPKDK+IKKFVIRNIVEAAAVRDI +ASVY 
Sbjct: 1   MTKKRCNGGRSKHGRGHVKFVRCTNCARCVPKDKSIKKFVIRNIVEAAAVRDIADASVYE 60

Query: 215 SFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTP 325
            + LPKLY KLHYCVSCAIHSKVVRNRSK+DR+IRTP
Sbjct: 61  VYALPKLYVKLHYCVSCAIHSKVVRNRSKEDRKIRTP 97


>SB_973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1200

 Score = 34.7 bits (76), Expect = 0.025
 Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
 Frame = +2

Query: 110 CAR-CVPKDKAIKKFVIRNIVEAAAVRD--INEASVYTSFQLPKLYAKLHYC--VS--CA 268
           C R C+ +D+ I  FVI     AAAVRD  + + ++Y      +       C  VS  C 
Sbjct: 664 CERDCIMRDRTICDFVICG--RAAAVRDCIMRDRAIYNCVMSDRFIRDCVMCDRVSRDCL 721

Query: 269 IHSKVVRNRSKKDRRIR 319
           IH +VVR+   +DR IR
Sbjct: 722 IHDRVVRDCVMRDRVIR 738


>SB_21203| Best HMM Match : MFS_1 (HMM E-Value=0.0055)
          Length = 554

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = -2

Query: 234 SLGSWNEVYTEASFMSLTAAASTIFL 157
           SLGS+N VY  A+ +SLT AA   F+
Sbjct: 254 SLGSYNAVYYLAASLSLTGAAVMTFI 279


>SB_25340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1105

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +2

Query: 2   HEAFN-DSEVRNMTRKRRNGGRA-KHGRGHVKAVR 100
           +E F  D+EV N +R+ RNG R  KH    V   R
Sbjct: 249 NEGFEGDNEVENASRRNRNGSRGLKHAHSDVHEYR 283


>SB_19355| Best HMM Match : MFS_1 (HMM E-Value=1.8e-22)
          Length = 572

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -2

Query: 234 SLGSWNEVYTEASFMSLTAAASTIFL 157
           SLGS+N VY  A+ ++LT AA   F+
Sbjct: 347 SLGSYNAVYYLAAALTLTGAALMTFI 372


>SB_22744| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 103

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 294 DLRRTGGSVHXPRATSQGIWRVHRMYRG 377
           DL RT   +H  R  ++ +W +H  Y G
Sbjct: 28  DLVRTSSPLHTIRHPARQLWHIHCFYTG 55


>SB_45447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1200

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 193  YVPHSGSFNNIPDHKLFD 140
            YV  S +F+ +P HKLFD
Sbjct: 984  YVDFSKAFDRVPRHKLFD 1001


>SB_33535| Best HMM Match : RVT_1 (HMM E-Value=1.4013e-45)
          Length = 469

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 193 YVPHSGSFNNIPDHKLFD 140
           YV  S +F+ +P HKLFD
Sbjct: 281 YVDFSKAFDRVPRHKLFD 298


>SB_21286| Best HMM Match : DUF352 (HMM E-Value=0.47)
          Length = 690

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 281 VVRNRSKKDRRIRTPXKSNFPRDMARSQNV 370
           ++ NRS   RR+ T   S++P D  R Q +
Sbjct: 145 IITNRSSFHRRVSTKSASSYPIDWKRIQRL 174


>SB_49331| Best HMM Match : DUF352 (HMM E-Value=0.47)
          Length = 586

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 281 VVRNRSKKDRRIRTPXKSNFPRDMARSQNV 370
           ++ NRS   RR+ T   S++P D  R Q +
Sbjct: 145 IITNRSSFHRRVSTKSASSYPIDWKRIQRL 174


>SB_48616| Best HMM Match : RVT_1 (HMM E-Value=2.8e-26)
          Length = 327

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 193 YVPHSGSFNNIPDHKLFD 140
           YV  S +F+ +P HKLFD
Sbjct: 58  YVDFSKAFDRVPRHKLFD 75


>SB_32319| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 551

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 193 YVPHSGSFNNIPDHKLFD 140
           YV  S +F+ +P HKLFD
Sbjct: 281 YVDFSKAFDRVPRHKLFD 298


>SB_39567| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 64

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 294 DLRRTGGSVHXPRATSQGIWRVHRMYRG 377
           DL RT   +H  R  ++ +W +H  Y G
Sbjct: 13  DLVRTSSPLHTIRHPARQLWHLHCFYTG 40


>SB_33968| Best HMM Match : Transformer (HMM E-Value=5.1)
          Length = 471

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 294 DLRRTGGSVHXPRATSQGIWRVHRMYRG 377
           DL RT   +H  R  ++ +W +H  Y G
Sbjct: 271 DLVRTSSPLHTIRHPARQLWHLHCFYTG 298


>SB_53084| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 936

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = -2

Query: 249 WSFAYSLGSWNEVYTEASFMSLTAAASTIFLITNFLMALSLGTQRAQ 109
           W++   L +W   Y +   +S T A S   + T  L  L L  ++ Q
Sbjct: 213 WNYTVRLANWLYEYVDQFVLSQTLAKSLAQVCTKKLSTLYLAAEQMQ 259


>SB_49978| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 64

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 294 DLRRTGGSVHXPRATSQGIWRVHRMYRG 377
           DL RT   +H  R  ++ +W +H  Y G
Sbjct: 13  DLVRTSSPLHTIRHPARQLWHLHCFYTG 40


>SB_41634| Best HMM Match : DUF1518 (HMM E-Value=5.9)
          Length = 321

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 294 DLRRTGGSVHXPRATSQGIWRVHRMYRG 377
           DL RT   +H  R  ++ +W +H  Y G
Sbjct: 164 DLVRTSSPLHTIRHPARQLWHLHCFYTG 191


>SB_27417| Best HMM Match : zf-CCHC (HMM E-Value=0.00021)
          Length = 538

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 294 DLRRTGGSVHXPRATSQGIWRVHRMYRG 377
           DL RT   +H  R  ++ +W +H  Y G
Sbjct: 68  DLVRTSSPLHTIRHPARQLWHLHCFYTG 95


>SB_18778| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 110

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 294 DLRRTGGSVHXPRATSQGIWRVHRMYRG 377
           DL RT   +H  R  ++ +W +H  Y G
Sbjct: 28  DLVRTSSPLHTIRHPARQLWHLHCFYTG 55


>SB_15389| Best HMM Match : zf-CCHC (HMM E-Value=0.00021)
          Length = 462

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 294 DLRRTGGSVHXPRATSQGIWRVHRMYRG 377
           DL RT   +H  R  ++ +W +H  Y G
Sbjct: 68  DLVRTSSPLHTIRHPARQLWHLHCFYTG 95


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,093,486
Number of Sequences: 59808
Number of extensions: 202143
Number of successful extensions: 588
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 632178915
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)