Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_F03
         (379 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92834-4|CAB07387.1|  117|Caenorhabditis elegans Hypothetical pr...   159   6e-40
AL132904-23|CAC35839.2|  312|Caenorhabditis elegans Hypothetical...    31   0.36 
AL132904-7|CAC35838.1|  430|Caenorhabditis elegans Hypothetical ...    31   0.36 
AL032635-6|CAE18002.1|  193|Caenorhabditis elegans Hypothetical ...    31   0.36 
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l...    29   1.5  
Z81491-2|CAB04020.1|  181|Caenorhabditis elegans Hypothetical pr...    28   2.5  
AF016416-8|AAB65271.1|  388|Caenorhabditis elegans Hypothetical ...    27   3.4  
Z75955-10|CAB00124.2|  410|Caenorhabditis elegans Hypothetical p...    27   4.5  
AL032635-5|CAB63375.1|  260|Caenorhabditis elegans Hypothetical ...    27   4.5  

>Z92834-4|CAB07387.1|  117|Caenorhabditis elegans Hypothetical
           protein F39B2.6 protein.
          Length = 117

 Score =  159 bits (386), Expect = 6e-40
 Identities = 72/97 (74%), Positives = 80/97 (82%)
 Frame = +2

Query: 35  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINEASVYT 214
           MT KRRN GR K  RGHV  +RCTNC RC PKDKAIKKFV+RNIVEAAAVRDI +AS YT
Sbjct: 1   MTFKRRNHGRNKKNRGHVAFIRCTNCGRCCPKDKAIKKFVVRNIVEAAAVRDIGDASAYT 60

Query: 215 SFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTP 325
            + LPKLY KLHYC++CAIHSKVVRNRS++ RR R P
Sbjct: 61  QYALPKLYHKLHYCIACAIHSKVVRNRSREARRDRNP 97


>AL132904-23|CAC35839.2|  312|Caenorhabditis elegans Hypothetical
           protein Y111B2A.10b protein.
          Length = 312

 Score = 30.7 bits (66), Expect = 0.36
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = +2

Query: 83  HVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINEASVYTSFQL-PKLYAKLH--Y 253
           H+K ++C NC+     +K+++  +IR+  E A   ++ +A      +L P    K H  Y
Sbjct: 80  HLKEIQCDNCSLVFQSEKSLQSHIIRHHQEDADELEVWKAPCSICKELFPSTSVKTHEWY 139

Query: 254 C 256
           C
Sbjct: 140 C 140


>AL132904-7|CAC35838.1|  430|Caenorhabditis elegans Hypothetical
           protein Y111B2A.10a protein.
          Length = 430

 Score = 30.7 bits (66), Expect = 0.36
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = +2

Query: 83  HVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINEASVYTSFQL-PKLYAKLH--Y 253
           H+K ++C NC+     +K+++  +IR+  E A   ++ +A      +L P    K H  Y
Sbjct: 198 HLKEIQCDNCSLVFQSEKSLQSHIIRHHQEDADELEVWKAPCSICKELFPSTSVKTHEWY 257

Query: 254 C 256
           C
Sbjct: 258 C 258


>AL032635-6|CAE18002.1|  193|Caenorhabditis elegans Hypothetical
           protein Y51A2A.11 protein.
          Length = 193

 Score = 30.7 bits (66), Expect = 0.36
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 14  NDSEVRNMTRKRRNGGRAKHGRGHVKAVRCTNCARCVP 127
           ND  +R +  K+ +G  A    G ++  RC N A C P
Sbjct: 79  NDDLIRALINKKVSGAHAVTWIGGLRKARCVNVAACAP 116


>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
           lipoprotein receptorrelated protein 2 protein.
          Length = 2192

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +3

Query: 228 PSCMQNSTTACHARSIAKWCVTDLRRTGGSVHXPRA 335
           PS   + T  C+  S  K C  +   TGGSV  PR+
Sbjct: 113 PSWKCDGTNDCYDGSDEKDCFVEFDATGGSVSAPRS 148


>Z81491-2|CAB04020.1|  181|Caenorhabditis elegans Hypothetical
           protein D1086.2 protein.
          Length = 181

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 16/66 (24%), Positives = 31/66 (46%)
 Frame = +2

Query: 161 NIVEAAAVRDINEASVYTSFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPXKSNF 340
           N++    +RD N   +   ++L  +   L YC+   +++  V NR      ++T  KS  
Sbjct: 82  NVITCKKLRDKNRNVIKQCYELDLVGTPLSYCIQRKLNADKVANRC-----VKTYLKSKD 136

Query: 341 PRDMAR 358
            R++ R
Sbjct: 137 TRELKR 142


>AF016416-8|AAB65271.1|  388|Caenorhabditis elegans Hypothetical
           protein F29A7.1 protein.
          Length = 388

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +2

Query: 86  VKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINEASVYTSFQ 223
           V   R  N   C+   K IK+F ++ I  AA  R + E  + T+ Q
Sbjct: 129 VSVYRTMNEGNCINASKVIKEFRVKTIRLAACSRSLEE-KIVTNIQ 173


>Z75955-10|CAB00124.2|  410|Caenorhabditis elegans Hypothetical
           protein R07B7.15 protein.
          Length = 410

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 267 RSIAKWCVTDLRRTGGSVHXPRATS-QGIWRVHR 365
           RSI K+    LRRT G++    A S  G+W  HR
Sbjct: 260 RSIQKFNSDTLRRTDGTISGKPAKSWNGVWVDHR 293


>AL032635-5|CAB63375.1|  260|Caenorhabditis elegans Hypothetical
           protein Y51A2A.7 protein.
          Length = 260

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 26  VRNMTRKRRNGGRAKHGRGHVKAVRCTNCARCVP 127
           +R +  K+ +G  A    G ++  RC N A C P
Sbjct: 150 IRALINKKVSGAHAVTWIGGLRKARCVNVAACAP 183


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,018,871
Number of Sequences: 27780
Number of extensions: 146997
Number of successful extensions: 442
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)