Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_F03
(379 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g56340.1 68416.m06264 40S ribosomal protein S26 (RPS26C) seve... 159 4e-40
At2g40590.1 68415.m05007 40S ribosomal protein S26 (RPS26B) 157 2e-39
At2g40510.1 68415.m04999 40S ribosomal protein S26 (RPS26A) 157 2e-39
At3g11950.1 68416.m01473 UbiA prenyltransferase family protein c... 27 4.1
At5g59110.1 68418.m07407 subtilisin-like serine protease-related... 26 9.6
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 26 9.6
At2g01600.1 68415.m00084 epsin N-terminal homology (ENTH) domain... 26 9.6
At1g14510.1 68414.m01720 PHD finger family protein contains Pfam... 26 9.6
>At3g56340.1 68416.m06264 40S ribosomal protein S26 (RPS26C) several
40S ribosomal protein S26
Length = 130
Score = 159 bits (387), Expect = 4e-40
Identities = 69/97 (71%), Positives = 81/97 (83%)
Frame = +2
Query: 35 MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINEASVYT 214
MT KRRNGGR KH RGHVK +RC+NC +C PKDKAIK+F++RNIVE AA+RD+ EASVY
Sbjct: 1 MTFKRRNGGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60
Query: 215 SFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTP 325
+ LPKLYAK YCVSCAIHS VVR RS+ +RR+RTP
Sbjct: 61 GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTP 97
>At2g40590.1 68415.m05007 40S ribosomal protein S26 (RPS26B)
Length = 131
Score = 157 bits (382), Expect = 2e-39
Identities = 68/97 (70%), Positives = 80/97 (82%)
Frame = +2
Query: 35 MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINEASVYT 214
MT KRRNGGR KH RGHV +RC+NC +C PKDKAIK+F++RNIVE AA+RD+ EASVY
Sbjct: 1 MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60
Query: 215 SFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTP 325
+ LPKLYAK YCVSCAIHS VVR RS+ +RR+RTP
Sbjct: 61 GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTP 97
>At2g40510.1 68415.m04999 40S ribosomal protein S26 (RPS26A)
Length = 133
Score = 157 bits (382), Expect = 2e-39
Identities = 68/97 (70%), Positives = 80/97 (82%)
Frame = +2
Query: 35 MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINEASVYT 214
MT KRRNGGR KH RGHV +RC+NC +C PKDKAIK+F++RNIVE AA+RD+ EASVY
Sbjct: 1 MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60
Query: 215 SFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTP 325
+ LPKLYAK YCVSCAIHS VVR RS+ +RR+RTP
Sbjct: 61 GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTP 97
>At3g11950.1 68416.m01473 UbiA prenyltransferase family protein
contains Pfam profile PF01040: UbiA prenyltransferase
family
Length = 954
Score = 27.1 bits (57), Expect = 4.1
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +2
Query: 62 RAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINEASV 208
+ K ++KAV AR P+DK + K V +V+ AA + ++EA +
Sbjct: 361 KEKPETSNLKAVTLEQTAREAPEDKLVSKEVDAAMVKEAA-KKVSEAEI 408
>At5g59110.1 68418.m07407 subtilisin-like serine protease-related
similar to prepro-cucumisin GI:807698 from [Cucumis
melo], subtilisin-like protease C1 [Glycine max]
GI:13325079
Length = 172
Score = 25.8 bits (54), Expect = 9.6
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +2
Query: 56 GGRAKHGRGHVKAVRCTNCARCVPKDKA 139
G RA +G GHV + TN DKA
Sbjct: 2 GKRATYGAGHVDPIAATNPGLVYEMDKA 29
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 25.8 bits (54), Expect = 9.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 110 CARCVPKDKAIKKFVIRNIVEAAAVRDIN 196
CARCVP K I+ + +V +A D+N
Sbjct: 609 CARCVPMGKGIET-KLPEVVNCSARTDLN 636
>At2g01600.1 68415.m00084 epsin N-terminal homology (ENTH)
domain-containing protein contains Pfam PF01417: ENTH
domain. ENTH (Epsin N-terminal homology) domain; similar
to clathrin assembly protein AP180 (GI:6492344) [Xenopus
laevis]
Length = 571
Score = 25.8 bits (54), Expect = 9.6
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +2
Query: 86 VKAVRCTNCARCVPKDKAIKK-FVIRNIVEAAA 181
V V+ TN C PKD+ ++K F ++ A A
Sbjct: 34 VAIVKATNHVECPPKDRHLRKIFAATSVTRARA 66
>At1g14510.1 68414.m01720 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 252
Score = 25.8 bits (54), Expect = 9.6
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +2
Query: 14 NDSEVRNMTRKRRNGGRAKHGRGHVKA 94
+ S N +R + +GG+ +H H KA
Sbjct: 146 DQSANHNSSRSKSSGGKPRHSESHTKA 172
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,574,134
Number of Sequences: 28952
Number of extensions: 135667
Number of successful extensions: 399
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 517767328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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