Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_F02
         (418 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10)          29   1.2  
SB_48144| Best HMM Match : F5_F8_type_C (HMM E-Value=2e-19)            29   1.5  
SB_53881| Best HMM Match : LSPR (HMM E-Value=1.7)                      29   1.5  

>SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10)
          Length = 1163

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 17/56 (30%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
 Frame = -1

Query: 268  NIPNHIRFHLIINNKNYLSYP*ILYYVFIQYI-YNKIFSVL*FYCIFVILFYRYVF 104
            +I  H  F +II + +Y+ +P I ++ F   I ++  FS++ ++  FVI+ + Y+F
Sbjct: 1066 SIITHHYFFVIITH-HYI-FPIITHHDFFSIITHHYFFSIITYHYFFVIITHHYIF 1119



 Score = 28.7 bits (61), Expect = 2.0
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -1

Query: 196  YYVFIQYIYNKIFSVL*FYCIFVILFYRYVF 104
            +Y+F  + ++  FS++  +  FVI+ Y Y+F
Sbjct: 1116 HYIFSIFTHHYFFSIITHHYSFVIITYHYIF 1146



 Score = 27.5 bits (58), Expect = 4.7
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -1

Query: 196 YYVFIQYIYNKIFSVL*FYCIFVILFYRYVF 104
           +Y+F    ++ IFS++  + IF I+ + Y+F
Sbjct: 810 HYIFSTITHHYIFSIITHHYIFSIITHHYIF 840


>SB_48144| Best HMM Match : F5_F8_type_C (HMM E-Value=2e-19)
          Length = 502

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 41  TKTLCLFHFGVFERLNRFIRFE-DVPIK*NYKYTIKSQY 154
           TKTL L + G++  + ++IR+   + +  NY Y +K  Y
Sbjct: 234 TKTLALLNMGIYAHIRQYIRYPWGICLIWNYGYFLKKFY 272


>SB_53881| Best HMM Match : LSPR (HMM E-Value=1.7)
          Length = 331

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = -1

Query: 262 PNHIRFHLIINNKNYLSYP*ILYYVFIQYIYNKIFSVL*FYCIFVILFY 116
           P    FH I + KN  +   +L Y+  +Y + + F+   F C+F++LF+
Sbjct: 219 PGGRAFHCIESLKNK-NIEALLTYLVEEYKFQRSFATTEFVCLFLLLFH 266


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,956,515
Number of Sequences: 59808
Number of extensions: 180737
Number of successful extensions: 331
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 329
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 777158991
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)