BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= S06A01NCLL0001_F02 (418 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10) 29 1.2 SB_48144| Best HMM Match : F5_F8_type_C (HMM E-Value=2e-19) 29 1.5 SB_53881| Best HMM Match : LSPR (HMM E-Value=1.7) 29 1.5 >SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10) Length = 1163 Score = 29.5 bits (63), Expect = 1.2 Identities = 17/56 (30%), Positives = 34/56 (60%), Gaps = 1/56 (1%) Frame = -1 Query: 268 NIPNHIRFHLIINNKNYLSYP*ILYYVFIQYI-YNKIFSVL*FYCIFVILFYRYVF 104 +I H F +II + +Y+ +P I ++ F I ++ FS++ ++ FVI+ + Y+F Sbjct: 1066 SIITHHYFFVIITH-HYI-FPIITHHDFFSIITHHYFFSIITYHYFFVIITHHYIF 1119 Score = 28.7 bits (61), Expect = 2.0 Identities = 10/31 (32%), Positives = 20/31 (64%) Frame = -1 Query: 196 YYVFIQYIYNKIFSVL*FYCIFVILFYRYVF 104 +Y+F + ++ FS++ + FVI+ Y Y+F Sbjct: 1116 HYIFSIFTHHYFFSIITHHYSFVIITYHYIF 1146 Score = 27.5 bits (58), Expect = 4.7 Identities = 10/31 (32%), Positives = 20/31 (64%) Frame = -1 Query: 196 YYVFIQYIYNKIFSVL*FYCIFVILFYRYVF 104 +Y+F ++ IFS++ + IF I+ + Y+F Sbjct: 810 HYIFSTITHHYIFSIITHHYIFSIITHHYIF 840 >SB_48144| Best HMM Match : F5_F8_type_C (HMM E-Value=2e-19) Length = 502 Score = 29.1 bits (62), Expect = 1.5 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%) Frame = +2 Query: 41 TKTLCLFHFGVFERLNRFIRFE-DVPIK*NYKYTIKSQY 154 TKTL L + G++ + ++IR+ + + NY Y +K Y Sbjct: 234 TKTLALLNMGIYAHIRQYIRYPWGICLIWNYGYFLKKFY 272 >SB_53881| Best HMM Match : LSPR (HMM E-Value=1.7) Length = 331 Score = 29.1 bits (62), Expect = 1.5 Identities = 15/49 (30%), Positives = 27/49 (55%) Frame = -1 Query: 262 PNHIRFHLIINNKNYLSYP*ILYYVFIQYIYNKIFSVL*FYCIFVILFY 116 P FH I + KN + +L Y+ +Y + + F+ F C+F++LF+ Sbjct: 219 PGGRAFHCIESLKNK-NIEALLTYLVEEYKFQRSFATTEFVCLFLLLFH 266 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,956,515 Number of Sequences: 59808 Number of extensions: 180737 Number of successful extensions: 331 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 297 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 329 length of database: 16,821,457 effective HSP length: 75 effective length of database: 12,335,857 effective search space used: 777158991 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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