Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_F02
         (418 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110479-3|CAB60312.2|  330|Caenorhabditis elegans Hypothetical ...    34   0.036
AF016657-1|AAB93653.1|  361|Caenorhabditis elegans Hypothetical ...    28   2.4  
Z67884-2|CAA91808.1|  429|Caenorhabditis elegans Hypothetical pr...    27   4.1  
U40942-6|AAP68937.1|  709|Caenorhabditis elegans High temperatur...    27   4.1  
U40942-5|AAC47068.1|  729|Caenorhabditis elegans High temperatur...    27   4.1  
AY070228-1|AAL55425.1|  729|Caenorhabditis elegans HID-1 protein.      27   4.1  
AF067613-11|AAN73862.2|  334|Caenorhabditis elegans Serpentine r...    27   4.1  
AF016436-3|AAC25896.1|  331|Caenorhabditis elegans Serpentine re...    27   5.5  

>AL110479-3|CAB60312.2|  330|Caenorhabditis elegans Hypothetical
           protein Y105C5B.4 protein.
          Length = 330

 Score = 34.3 bits (75), Expect = 0.036
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
 Frame = -1

Query: 157 SVL*FYCIFVILFYRYVFES----NKTIETFKNSKMKQTKSLRNLKLIFVLKI 11
           S L   C+++I+ Y Y+F S    N  I  F  SK KQ + LR ++L  ++ I
Sbjct: 194 SFLFLNCLYLIIAYFYLFYSLKKRNSRIANFPVSKSKQIQKLREIRLFIMISI 246


>AF016657-1|AAB93653.1|  361|Caenorhabditis elegans Hypothetical
           protein C16C4.7 protein.
          Length = 361

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 62  HFGVFERLNRFIRFEDVPIK*NYKYTIKSQYRKYFIINILY 184
           H  +FE+L  F     +P+K   KY I   Y ++FI N L+
Sbjct: 228 HNFIFEKLFLFRNPVTIPLKKFPKYPISRLYPQFFIKNCLF 268


>Z67884-2|CAA91808.1|  429|Caenorhabditis elegans Hypothetical
           protein T14G8.4 protein.
          Length = 429

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
 Frame = -2

Query: 228 IKTIYRIRKSYTTCLYNIFIIKYFLYCDF----IVYL*FYFIGTSSNLIKRLRRS 76
           I  I++I KS    L+  F+I + L C F    IV    + +GT  NL   LR+S
Sbjct: 207 IHKIFKILKSQILALWLDFLIVFVLLCCFFQLNIVMWCPFIVGTVVNLNAALRQS 261


>U40942-6|AAP68937.1|  709|Caenorhabditis elegans High
           temperature-induced dauerformation protein 1, isoform b
           protein.
          Length = 709

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 15  LRTNINFRLRRLFVCFILEFLNVSIVLLDSKTYL*NKITNI 137
           L T  N+RL+ LF CF+   +NVS  +        NK+ ++
Sbjct: 434 LITTGNYRLQTLFDCFLTIMVNVSPYMKSLSMVAANKLVHL 474


>U40942-5|AAC47068.1|  729|Caenorhabditis elegans High
           temperature-induced dauerformation protein 1, isoform a
           protein.
          Length = 729

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 15  LRTNINFRLRRLFVCFILEFLNVSIVLLDSKTYL*NKITNI 137
           L T  N+RL+ LF CF+   +NVS  +        NK+ ++
Sbjct: 434 LITTGNYRLQTLFDCFLTIMVNVSPYMKSLSMVAANKLVHL 474


>AY070228-1|AAL55425.1|  729|Caenorhabditis elegans HID-1 protein.
          Length = 729

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 15  LRTNINFRLRRLFVCFILEFLNVSIVLLDSKTYL*NKITNI 137
           L T  N+RL+ LF CF+   +NVS  +        NK+ ++
Sbjct: 434 LITTGNYRLQTLFDCFLTIMVNVSPYMKSLSMVAANKLVHL 474


>AF067613-11|AAN73862.2|  334|Caenorhabditis elegans Serpentine
           receptor, class z protein19 protein.
          Length = 334

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -1

Query: 190 VFIQYIYNKIFSVL*FYCIFVILFYRYVFESNK 92
           + I YI+  +F+ L  + + +   Y YVF++N+
Sbjct: 26  ILINYIFISVFATLVAFNLVLFTLYVYVFKTNR 58


>AF016436-3|AAC25896.1|  331|Caenorhabditis elegans Serpentine
           receptor, class j protein40 protein.
          Length = 331

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -2

Query: 312 LIIMALNSLSKNI-KKIFQITYGFT**LIIKTIYRIRKSYTTCLYNIFI 169
           +II  LNS+S  + KKI +  +     LI++T   I  S+  CL+  FI
Sbjct: 220 MIINKLNSMSITVSKKIARFQFELLRALIVQTTIPIVISFAPCLFCWFI 268


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,066,856
Number of Sequences: 27780
Number of extensions: 158392
Number of successful extensions: 389
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 389
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)