Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_F02
         (418 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    21   5.6  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   7.4  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   7.4  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   7.4  
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    20   9.7  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    20   9.7  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    20   9.7  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           20   9.7  

>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 238 IINNKNYLSYP*ILYYVFI 182
           I NN NY +Y   LYY  I
Sbjct: 323 IHNNNNYKNYNKKLYYNII 341


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = -1

Query: 136 IFVILFYRYVFESNKTIETF--KNSKMKQTKSL 44
           IF+ILFY  +  S +  E    + +K    KSL
Sbjct: 234 IFIILFYSRLLSSIRNHEKMLREQAKKMNVKSL 266


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -3

Query: 290 HYLKT*KKYSKSHTVSLNN 234
           +Y+ + ++YS+SH +S  N
Sbjct: 337 YYMYSREQYSQSHLISNEN 355


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = -1

Query: 136 IFVILFYRYVFESNKTIETF--KNSKMKQTKSL 44
           IF+ILFY  +  S +  E    + +K    KSL
Sbjct: 234 IFIILFYSRLLSSIRNHEKMLREQAKKMNVKSL 266


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 79  FKNSKMKQTKSLRNLKLI 26
           F+N +MK  K LR +K I
Sbjct: 56  FQNRRMKLKKELRAVKEI 73


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -1

Query: 124 LFYRYVFESNKTIET 80
           L   Y FESNK  ET
Sbjct: 389 LIRNYYFESNKIDET 403


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +2

Query: 71  VFERLNRFIRFEDVPIK*NYKYTIKSQYRKYFIINI 178
           +   L+    + +   K NY    K  Y K +IINI
Sbjct: 314 IISSLSNNYNYNNNNYKYNYNNYNKKLYYKNYIINI 349


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -1

Query: 124 LFYRYVFESNKTIET 80
           L   Y FESNK  ET
Sbjct: 389 LIRNYYFESNKIDET 403


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,494
Number of Sequences: 438
Number of extensions: 2436
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10626762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)