Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_F01
         (264 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb...    28   0.24 
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    26   0.99 
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    24   3.0  
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c...    23   5.3  
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    23   7.0  
SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb...    23   7.0  
SPAC30C2.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    23   7.0  
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    23   9.2  

>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 490

 Score = 27.9 bits (59), Expect = 0.24
 Identities = 21/59 (35%), Positives = 27/59 (45%)
 Frame = +3

Query: 42  NAL*SHKNASHRYKMLRVRWHLGRIQHRVSMRLCVTRSPAAAERCHLAHYSRKQTYALN 218
           N+L S K  S     L   WH G  ++ V   L    SP+ A   +L+ YSRK    LN
Sbjct: 367 NSLFSMKRPSSSSSSLSGSWH-GDTENSVKQSLA---SPSEASLPNLSKYSRKNAKKLN 421


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 25.8 bits (54), Expect = 0.99
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 153 SPAAAERCHLAHYSRKQTYALNANSITAP 239
           SP+ A   H  H+S   +YA++  S T+P
Sbjct: 112 SPSTAASQHHHHHSSSSSYAVSPTSPTSP 140


>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
           Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 24.2 bits (50), Expect = 3.0
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 5   HEAGYCRRLHTGQCTL 52
           HE GY R+LH  + TL
Sbjct: 394 HETGYSRKLHEARDTL 409


>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 436

 Score = 23.4 bits (48), Expect = 5.3
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +2

Query: 77  LQNVKGKVASRSNSTQSFDEALRDAESGGCRAVPPRP 187
           LQN   K+ +   + Q++ +  +     G +AVP  P
Sbjct: 173 LQNAGKKLETVQENPQAYSKVTQQEPQAGQKAVPQEP 209


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 23.0 bits (47), Expect = 7.0
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +1

Query: 163 LPSGATSPTIPENKPMP*TPTVLQHRDRAPP 255
           L S + SP    N+  P  PT +     APP
Sbjct: 327 LHSKSPSPAFTANRFSPAAPTTVSSERNAPP 357


>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 23.0 bits (47), Expect = 7.0
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +3

Query: 180 LAHYSRKQTYALNANSITAPRPRAAF 257
           + +YS+       AN ++AP P+ +F
Sbjct: 475 IGYYSQANPQMYYANQVSAPPPQGSF 500


>SPAC30C2.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 210

 Score = 23.0 bits (47), Expect = 7.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 122 QSFDEALRDAESGGCRAVPPRPLF 193
           Q+ D  + D+ +GGC  +PP  LF
Sbjct: 140 QAIDVVI-DSYNGGCVNLPPETLF 162


>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 155 TPRHAEPHRNSVLNST*MPP 96
           TP  A PH +S+L+S   PP
Sbjct: 432 TPGLAYPHDSSMLSSNYRPP 451


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,092,498
Number of Sequences: 5004
Number of extensions: 18688
Number of successful extensions: 48
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 53488084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)