Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_F01
(264 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_32063| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.0
SB_33635| Best HMM Match : Ponericin (HMM E-Value=2.9) 27 1.8
SB_24403| Best HMM Match : BRF1 (HMM E-Value=1.2) 27 1.8
SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 1.8
SB_43136| Best HMM Match : HEAT (HMM E-Value=1.7e-15) 27 3.2
SB_34627| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.2
SB_55417| Best HMM Match : Kelch_2 (HMM E-Value=4.8e-23) 27 3.2
SB_27497| Best HMM Match : Death (HMM E-Value=0.028) 26 5.5
SB_800| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.5
SB_56087| Best HMM Match : Extensin_2 (HMM E-Value=0.29) 25 7.3
SB_44005| Best HMM Match : CUE (HMM E-Value=0.38) 25 7.3
SB_48131| Best HMM Match : CLN3 (HMM E-Value=6.7e-06) 25 9.6
SB_8404| Best HMM Match : TPR_1 (HMM E-Value=0) 25 9.6
>SB_32063| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 250
Score = 28.3 bits (60), Expect = 1.0
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -2
Query: 236 CCNTVGV*GIGLFSGIVGEVAPLG-SRRTPRHAEPHRNSVLNST*MPPY 93
C NT V + F + + P+G SR P H P+R S ++ +PPY
Sbjct: 6 CPNTYPVIDLSRF--VPSHLPPIGHSRFVPAHLPPYRPSRFVTSHLPPY 52
>SB_33635| Best HMM Match : Ponericin (HMM E-Value=2.9)
Length = 224
Score = 27.5 bits (58), Expect = 1.8
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = -1
Query: 222 WRLRHRFVFWNSGRGGTARQPPDSASRRASSKLCVEFDL 106
W + F W + G +R+ + + A +LC+EF L
Sbjct: 75 WPQQLNFAVWCATAGSRSRKKGNPYKKAAFQRLCIEFGL 113
>SB_24403| Best HMM Match : BRF1 (HMM E-Value=1.2)
Length = 623
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/52 (25%), Positives = 24/52 (46%)
Frame = +2
Query: 47 TLISQKRVAPLQNVKGKVASRSNSTQSFDEALRDAESGGCRAVPPRPLFQKT 202
+L + K+ + +Q +KG AS T + + S + P PL+ +T
Sbjct: 456 SLNTAKQPSTVQGIKGSAASPCTGTSAIKDLQNVISSMSTNLIHPTPLYMRT 507
>SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1929
Score = 27.5 bits (58), Expect = 1.8
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = +2
Query: 11 AGYCRRLHTGQCTLISQKRVAPLQNVKGKVASRSNSTQSFDEALRDAE 154
A Y R H GQ IS K + K V R+NS FD A D++
Sbjct: 395 AEYIRNYHDGQIVKISSKPTYSTRRRKTLVRPRANSL--FDRAPSDSQ 440
>SB_43136| Best HMM Match : HEAT (HMM E-Value=1.7e-15)
Length = 426
Score = 26.6 bits (56), Expect = 3.2
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +2
Query: 77 LQNVKGKVASRSNSTQSFDEALRDAESGGCRAVPPRPLFQKTNL 208
+Q+VK A++ Q D ++ GG ++ PP L TNL
Sbjct: 347 VQSVKDDGAAQRAGVQVGDRIIKSTPLGGPQSAPPGRLSAPTNL 390
>SB_34627| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1925
Score = 26.6 bits (56), Expect = 3.2
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +1
Query: 178 TSPTIPENKPMP*TPTVLQH 237
T+P I +N+ +P TPT+ +H
Sbjct: 1460 TTPNITKNQSLPTTPTITKH 1479
>SB_55417| Best HMM Match : Kelch_2 (HMM E-Value=4.8e-23)
Length = 1153
Score = 26.6 bits (56), Expect = 3.2
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 154 VRRLPSGATSPTIPENKPMP*TPTV 228
+ LPS PT+P KP+P TP V
Sbjct: 827 ISALPSPTVVPTVPPAKPVP-TPVV 850
>SB_27497| Best HMM Match : Death (HMM E-Value=0.028)
Length = 892
Score = 25.8 bits (54), Expect = 5.5
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +1
Query: 160 RLPSGATSPTIPEN 201
RLPSG T P +P+N
Sbjct: 796 RLPSGVTGPLLPDN 809
>SB_800| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 25.8 bits (54), Expect = 5.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 163 LPSGATSPTIPENKPMP*TPTV 228
+PS T PT+P + +P PTV
Sbjct: 448 VPSDPTDPTVPSDPTVPAGPTV 469
>SB_56087| Best HMM Match : Extensin_2 (HMM E-Value=0.29)
Length = 403
Score = 25.4 bits (53), Expect = 7.3
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +1
Query: 163 LPSGATSPTIPENKPMP*TPTVLQHRD-RAPPS 258
LP TSP KP+P PT L + +APPS
Sbjct: 140 LPRIPTSPPSYPYKPLPRIPTSLSLKSLQAPPS 172
>SB_44005| Best HMM Match : CUE (HMM E-Value=0.38)
Length = 761
Score = 25.4 bits (53), Expect = 7.3
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +3
Query: 93 VRWHLGRIQHRVSMRLCVTRSPAAAERCHL 182
V WH +QHRV L +T E H+
Sbjct: 407 VTWHRVHLQHRVDEDLQITSEKTFVEEGHV 436
>SB_48131| Best HMM Match : CLN3 (HMM E-Value=6.7e-06)
Length = 300
Score = 25.0 bits (52), Expect = 9.6
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = +1
Query: 148 RGVRRLPSGATSPTIPENKPMP*TPTVLQH 237
+ +R++P + SP+ P N +P T H
Sbjct: 201 KNMRQIPQKSVSPSKPPNSHLPYARTTFSH 230
>SB_8404| Best HMM Match : TPR_1 (HMM E-Value=0)
Length = 1981
Score = 25.0 bits (52), Expect = 9.6
Identities = 17/54 (31%), Positives = 22/54 (40%)
Frame = +3
Query: 27 VSILGNAL*SHKNASHRYKMLRVRWHLGRIQHRVSMRLCVTRSPAAAERCHLAH 188
V+ NAL SH+ AS YK + R GR + + A CH H
Sbjct: 291 VNDYSNALASHRQASQLYKEMGERLSEGRELGNIGAVHVLLLQYDQAIHCHQEH 344
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,018,920
Number of Sequences: 59808
Number of extensions: 172544
Number of successful extensions: 621
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 16,821,457
effective HSP length: 64
effective length of database: 12,993,745
effective search space used: 298856135
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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