Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_F01
         (264 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    20   4.5  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           19   7.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    19   7.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    19   7.8  

>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 20.2 bits (40), Expect = 4.5
 Identities = 8/32 (25%), Positives = 15/32 (46%)
 Frame = +2

Query: 167 RAVPPRPLFQKTNLCLKRQQYYSTATARRLLY 262
           R+  P+ +   +N C     YY+    ++L Y
Sbjct: 297 RSKEPKIISSLSNSCNYSNNYYNNNNYKKLYY 328


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 19.4 bits (38), Expect = 7.8
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -1

Query: 228 YCWRLRHRFVFWNSGRGGTA 169
           +CW  R  ++  N G  GT+
Sbjct: 458 WCWDTRKEYIPQNLGVIGTS 477


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 19.4 bits (38), Expect = 7.8
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +2

Query: 149  AESGGCRAVPPRPLFQKTNLCLKRQQ 226
            A + GC + PP     K+    +RQQ
Sbjct: 1746 AMTEGCASPPPAATSMKSVSSRRRQQ 1771


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 19.4 bits (38), Expect = 7.8
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +2

Query: 149  AESGGCRAVPPRPLFQKTNLCLKRQQ 226
            A + GC + PP     K+    +RQQ
Sbjct: 1742 AMTEGCASPPPAATSMKSVSSRRRQQ 1767


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,376
Number of Sequences: 438
Number of extensions: 1459
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  4887441
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)