Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_F01
(264 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g19920.1 68417.m02918 disease resistance protein (TIR class),... 31 0.10
At3g23590.1 68416.m02967 expressed protein 27 2.3
At1g62360.1 68414.m07036 homeobox protein SHOOT MERISTEMLESS (ST... 26 3.0
At2g19110.1 68415.m02231 ATPase E1-E2 type family protein / halo... 26 3.9
At1g16800.1 68414.m02018 tRNA-splicing endonuclease positive eff... 26 3.9
At2g34650.1 68415.m04256 protein kinase PINOID (PID) identical t... 25 6.9
At3g60670.1 68416.m06788 zinc-binding protein, putative similar ... 25 9.1
At3g26350.1 68416.m03287 expressed protein ; expression support... 25 9.1
At2g43850.2 68415.m05452 ankyrin protein kinase, putative (APK1)... 25 9.1
At2g43850.1 68415.m05451 ankyrin protein kinase, putative (APK1)... 25 9.1
At2g31650.1 68415.m03864 trithorax 1 (ATX-1) (TRX1) identical to... 25 9.1
At2g22610.1 68415.m02680 kinesin motor protein-related 25 9.1
>At4g19920.1 68417.m02918 disease resistance protein (TIR class),
putative domain signature TIR exists, suggestive of a
disease resistance protein.
Length = 274
Score = 31.1 bits (67), Expect = 0.10
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +1
Query: 166 PSGATSPTIPENKPMP*TPTVLQHRDRAP 252
P P IPE++P P TP VL R R P
Sbjct: 3 PPSPPPPPIPESRPRPLTPPVLLTRPRPP 31
>At3g23590.1 68416.m02967 expressed protein
Length = 1309
Score = 26.6 bits (56), Expect = 2.3
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -2
Query: 188 VGEVAPLGSRRTPRHAEPHRNSVLNST 108
VG+V +GS+ TP H RNS L S+
Sbjct: 708 VGDVPTVGSQLTPEHLLSVRNSYLVSS 734
>At1g62360.1 68414.m07036 homeobox protein SHOOT MERISTEMLESS (STM)
identical to homeobox protein SHOOT MERISTEMLESS (STM)
SP:Q38874 from [Arabidopsis thaliana]
Length = 382
Score = 26.2 bits (55), Expect = 3.0
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 14 GYCRRLHTGQCTLISQKRVAPLQNVKGKVASRSN 115
GY + H Q + + + +AP Q K KVAS S+
Sbjct: 53 GYAYQSHHQQSSSLFLQSLAPPQGTKNKVASSSS 86
>At2g19110.1 68415.m02231 ATPase E1-E2 type family protein / haloacid
dehalogenase-like hydrolase family protein /
heavy-metal-associated domain-containing protein similar
to cadmium efflux pump protein from Geobacillus
stearothermophilus [GI:16753175], cadmium resistance
protein B from Staphylococcus aureus [GI:14020985];
T20K24.13 has been merged with T20K24.12 per suggestion
of Dr. Kristian Axelsen (axe@biobase.dk)
Length = 1172
Score = 25.8 bits (54), Expect = 3.9
Identities = 14/44 (31%), Positives = 18/44 (40%)
Frame = +2
Query: 5 HEAGYCRRLHTGQCTLISQKRVAPLQNVKGKVASRSNSTQSFDE 136
HE G TG+ TL S++ G + QSFDE
Sbjct: 956 HEKGCSDEKQTGEITLASEEETDDQDCSSGCCVNEGTVKQSFDE 999
>At1g16800.1 68414.m02018 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 1939
Score = 25.8 bits (54), Expect = 3.9
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 201 VFWNSGRGGTARQPPDSASRRASSKLCVEFDLDATLPLT 85
+ WNSG GGTA + + ++ S L D T+P++
Sbjct: 225 IHWNSGDGGTAFRVSGTETKDISRPLIYMAWDDITVPVS 263
>At2g34650.1 68415.m04256 protein kinase PINOID (PID) identical to
protein kinase PINOID [Arabidopsis thaliana]
gi|7208442|gb|AAF40202; contains protein kinase domain,
Pfam:PF00069
Length = 438
Score = 25.0 bits (52), Expect = 6.9
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -2
Query: 200 FSGIVGEVAPLGSRRTPRHAEPHRNSVLNS 111
FS IV E G + RH +PHR L+S
Sbjct: 152 FSCIVMEYCSGGDLHSLRHRQPHRRFSLSS 181
>At3g60670.1 68416.m06788 zinc-binding protein, putative similar to
zinc-binding protein [Pisum sativum] GI:16117799;
contains Pfam profile PF04640 : Protein of unknown
function, DUF597
Length = 245
Score = 24.6 bits (51), Expect = 9.1
Identities = 11/47 (23%), Positives = 19/47 (40%)
Frame = -1
Query: 192 NSGRGGTARQPPDSASRRASSKLCVEFDLDATLPLTFCSGATRFCEI 52
NS + + P S R S +C+ D P FC + + ++
Sbjct: 89 NSSKVVFINERPQSRQFRGSGNICITCDRSLQSPYLFCCLSCKISDV 135
>At3g26350.1 68416.m03287 expressed protein ; expression supported
by MPSS
Length = 356
Score = 24.6 bits (51), Expect = 9.1
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +1
Query: 172 GATSPTIPENKPMP*TPTVLQHRDRAP 252
G+T P IP+ P PT H R P
Sbjct: 134 GSTLPPIPKPSPWRTAPTPSPHHRRGP 160
>At2g43850.2 68415.m05452 ankyrin protein kinase, putative (APK1)
similar to ankyrin-kinase [Medicago truncatula]
gi|18700701|gb|AAL78674;contains Pfam profile PF00069:
Protein kinase domain; contains Pfam profile PF00023:
Ankyrin repeat
Length = 479
Score = 24.6 bits (51), Expect = 9.1
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = -1
Query: 219 RLRHRFVFWNSGRGGTARQPPDSASRRASSKLCVEFDLDATLPLTF 82
R RF F R+ PDS+ + V +LD+T+ L F
Sbjct: 39 RTNMRFSFGRQSSLDPIRRSPDSSKSDDEPHMSVPENLDSTMQLLF 84
>At2g43850.1 68415.m05451 ankyrin protein kinase, putative (APK1)
similar to ankyrin-kinase [Medicago truncatula]
gi|18700701|gb|AAL78674;contains Pfam profile PF00069:
Protein kinase domain; contains Pfam profile PF00023:
Ankyrin repeat
Length = 479
Score = 24.6 bits (51), Expect = 9.1
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = -1
Query: 219 RLRHRFVFWNSGRGGTARQPPDSASRRASSKLCVEFDLDATLPLTF 82
R RF F R+ PDS+ + V +LD+T+ L F
Sbjct: 39 RTNMRFSFGRQSSLDPIRRSPDSSKSDDEPHMSVPENLDSTMQLLF 84
>At2g31650.1 68415.m03864 trithorax 1 (ATX-1) (TRX1) identical to
trithorax-like protein 1 GI:12659210 from [Arabidopsis
thaliana]; characterized in Alvarez-Venegas R,et al,
ATX-1, an Arabidopsis Homolog of Trithorax, Activates
Flower Homeotic Genes.(Curr Biol. 2003 Apr
15;13(8):627-37 PMID: 12699618); contains Pfam profiles
PF00856: SET domain, PF00855: PWWP domain, PF00628,
PHD-finger; identical to cDNA trithorax-like protein 1
(TRX1) GI:12659209
Length = 1062
Score = 24.6 bits (51), Expect = 9.1
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 12 RDTAGVSILGNAL*SHKNASHRYKMLRVRW 101
R ++ VS+ N+L H+N Y+ +RV W
Sbjct: 577 RPSSHVSMCKNSLGRHQNQPTGYRPVRVDW 606
>At2g22610.1 68415.m02680 kinesin motor protein-related
Length = 1093
Score = 24.6 bits (51), Expect = 9.1
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 77 LQNVKGKVASRSNSTQSFDEALRDAES 157
+QN++GK R NS +S E +D ++
Sbjct: 791 IQNLEGKNKGRDNSYRSLQEKNKDLQN 817
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,071,548
Number of Sequences: 28952
Number of extensions: 110688
Number of successful extensions: 336
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 335
length of database: 12,070,560
effective HSP length: 66
effective length of database: 10,159,728
effective search space used: 213354288
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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