Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_E24
         (456 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    21   5.5  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    21   5.5  
AF017414-2|AAB70261.1|  150|Tribolium castaneum abdominal-A prot...    21   5.5  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    21   5.5  
X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.       21   7.2  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    21   7.2  

>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -2

Query: 143 AACRDAFIFSCSYSRICASF*MYVSPSAVTVTG*SSCRIPAAPG 12
           AA   A   S + + +  +   Y   ++  V   +SC  PAAPG
Sbjct: 80  AAVSAASSVSAASASMAVAAQFYHQAASAVVDPLNSCSQPAAPG 123



 Score = 20.6 bits (41), Expect = 7.2
 Identities = 10/51 (19%), Positives = 24/51 (47%)
 Frame = +1

Query: 112 QLKMKASRQAARYLQELDSVNREQKADQDRLDNENRKKGEIENKHRQKGHE 264
           ++K+K   +A + + E     RE++  +     +  K+ +IE +     H+
Sbjct: 209 RMKLKKELRAVKEINE--QARREREEQERHKQQQQEKQQKIEQQTHSSIHQ 257


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -2

Query: 143 AACRDAFIFSCSYSRICASF*MYVSPSAVTVTG*SSCRIPAAPG 12
           AA   A   S + + +  +   Y   ++  V   +SC  PAAPG
Sbjct: 139 AAVSAASSVSAASASMAVAAQFYHQAASAVVDPLNSCSQPAAPG 182



 Score = 20.6 bits (41), Expect = 7.2
 Identities = 10/51 (19%), Positives = 24/51 (47%)
 Frame = +1

Query: 112 QLKMKASRQAARYLQELDSVNREQKADQDRLDNENRKKGEIENKHRQKGHE 264
           ++K+K   +A + + E     RE++  +     +  K+ +IE +     H+
Sbjct: 268 RMKLKKELRAVKEINE--QARREREEQERHKQQQQEKQQKIEQQTHSSIHQ 316


>AF017414-2|AAB70261.1|  150|Tribolium castaneum abdominal-A
           protein.
          Length = 150

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -2

Query: 143 AACRDAFIFSCSYSRICASF*MYVSPSAVTVTG*SSCRIPAAPG 12
           AA   A   S + + +  +   Y   ++  V   +SC  PAAPG
Sbjct: 80  AAVSAASSVSAASASMAVAAQFYHQAASAVVDPLNSCSQPAAPG 123


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -2

Query: 143 AACRDAFIFSCSYSRICASF*MYVSPSAVTVTG*SSCRIPAAPG 12
           AA   A   S + + +  +   Y   ++  V   +SC  PAAPG
Sbjct: 139 AAVSAASSVSAASASMAVAAQFYHQAASAVVDPLNSCSQPAAPG 182


>X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.
          Length = 133

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 10/51 (19%), Positives = 24/51 (47%)
 Frame = +1

Query: 112 QLKMKASRQAARYLQELDSVNREQKADQDRLDNENRKKGEIENKHRQKGHE 264
           ++K+K   +A + + E     RE++  +     +  K+ +IE +     H+
Sbjct: 58  RMKLKKELRAVKEINE--QARREREEQERHKQQQQEKQQKIEQQTHSSIHQ 106


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = -3

Query: 289 PLVSLLQPSRDPSVCVCFQSRPSS 218
           P   ++ P++DP++      RP S
Sbjct: 77  PATPVIDPAKDPAIYSNLLPRPGS 100


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.313    0.128    0.341 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,332
Number of Sequences: 336
Number of extensions: 1459
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10406187
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.0 bits)