Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_E23
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32805| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.005
SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)                   38   0.006
SB_7378| Best HMM Match : SCP (HMM E-Value=3.3e-29)                    33   0.099
SB_57943| Best HMM Match : SCP (HMM E-Value=5.70048e-42)               33   0.17 
SB_47116| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.23 
SB_887| Best HMM Match : SCP (HMM E-Value=7.1e-25)                     32   0.30 
SB_9137| Best HMM Match : SCP (HMM E-Value=3.6e-18)                    31   0.40 
SB_8749| Best HMM Match : SCP (HMM E-Value=4.9e-16)                    31   0.53 
SB_8748| Best HMM Match : Astacin (HMM E-Value=0)                      31   0.70 
SB_7926| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.70 
SB_41991| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.92 
SB_59700| Best HMM Match : SCP (HMM E-Value=1.6e-14)                   30   1.2  
SB_55473| Best HMM Match : SCP (HMM E-Value=1.6e-22)                   30   1.2  
SB_11891| Best HMM Match : F5_F8_type_C (HMM E-Value=4.7e-35)          30   1.2  
SB_4646| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.6  
SB_12270| Best HMM Match : Big_2 (HMM E-Value=8.1)                     29   2.8  
SB_27401| Best HMM Match : SCP (HMM E-Value=9e-23)                     28   3.7  
SB_41| Best HMM Match : No HMM Matches (HMM E-Value=.)                 28   3.7  
SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)                  28   4.9  
SB_3100| Best HMM Match : SCP (HMM E-Value=1.5e-20)                    28   4.9  
SB_21314| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_32805| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score = 37.9 bits (84), Expect = 0.005
 Identities = 21/57 (36%), Positives = 29/57 (50%)
 Frame = +2

Query: 323 GENLYWYSTTDSTYKLNVDNAMESWFNEYKDYKYAPLKQSDFDKSKPKIGHYTQMAW 493
           GENLY   TT  T     D A++SW++E  +Y Y        +     IGH+TQ+ W
Sbjct: 126 GENLYNKGTTSGTVSTCQD-AVDSWYSEIDNYDYTDYT----NHPGGVIGHFTQIVW 177


>SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)
          Length = 5087

 Score = 37.5 bits (83), Expect = 0.006
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = +2

Query: 362  YKLNVDNAMESWFNEYKDYKYAPLKQSDFDKSKPKIGHYTQMAW 493
            Y L  D A E W++E KDY +  L  +       K GH+TQ+ W
Sbjct: 3699 YDLRGDKAAEMWYDEVKDYNFETLAYN------AKCGHFTQLVW 3736


>SB_7378| Best HMM Match : SCP (HMM E-Value=3.3e-29)
          Length = 264

 Score = 33.5 bits (73), Expect = 0.099
 Identities = 24/90 (26%), Positives = 33/90 (36%)
 Frame = +2

Query: 224 WDEELXXXXXXXXXQNKNFHNPDKTLGSGRFQTGENLYWYSTTDSTYKLNVDNAMESWFN 403
           W +EL         +     +   +    R   GENL  +S     Y    D A E W+ 
Sbjct: 140 WSDELAREAQYYAEKLAQQRSMQHSSKCSRNDAGENLAMFS---GRYDTAGDMACEMWYE 196

Query: 404 EYKDYKYAPLKQSDFDKSKPKIGHYTQMAW 493
           E K Y +    +  F       GH+TQM W
Sbjct: 197 ESKKYSFV---RGGFQGGT---GHFTQMVW 220


>SB_57943| Best HMM Match : SCP (HMM E-Value=5.70048e-42)
          Length = 632

 Score = 32.7 bits (71), Expect = 0.17
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
 Frame = +2

Query: 317 QTGENLY-WYSTTDSTYKLNVDNAMESWFNEYKDYKYA-PLKQSDFDKSKPKIGHYTQMA 490
           Q GEN+Y  +   D    +N + A++ W+NE  +Y +  P  QS+        GH+TQ+ 
Sbjct: 53  QDGENIYVQFGQAD----INGEEAVDKWYNEVNNYDFGKPGFQSN-------TGHFTQVV 101

Query: 491 WSE 499
           W +
Sbjct: 102 WRD 104


>SB_47116| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 106

 Score = 32.3 bits (70), Expect = 0.23
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 362 YKLNVDNAMESWFNEYKDYKYAPLKQSDFDKSKPKIGHYT 481
           Y+ N  + ++ WF+E + Y Y   K S  +  +P  GHYT
Sbjct: 44  YQKNPTDGVQDWFDERQHYTYG--KHSPRNCRRPSCGHYT 81


>SB_887| Best HMM Match : SCP (HMM E-Value=7.1e-25)
          Length = 147

 Score = 31.9 bits (69), Expect = 0.30
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = +2

Query: 323 GENLYWYSTTDSTYKLNVDNAMESWFNEYKDYKYAPLKQSDFDKSKPKIGHYTQMAW 493
           GENLY  S ++    +N  + ++ W++E   YK+      D    +   GH+TQ+ W
Sbjct: 59  GENLYMCSPSE----INAGDIVDEWYSEISKYKF------DKPGWQSGTGHFTQVVW 105


>SB_9137| Best HMM Match : SCP (HMM E-Value=3.6e-18)
          Length = 708

 Score = 31.5 bits (68), Expect = 0.40
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = +2

Query: 320 TGENLYWYSTTDSTYKLNVDNAMESWFNEYKDYKYAPLKQSDFDKSKPKIGHYTQMAW 493
           +GEN+        +  L    A+E W+NE + Y +A      + +  PK  H+ QM W
Sbjct: 591 SGENIAQLRANPDSLHL-ARKAVELWYNEVRSYSFA------YPQLTPKDRHFVQMIW 641


>SB_8749| Best HMM Match : SCP (HMM E-Value=4.9e-16)
          Length = 369

 Score = 31.1 bits (67), Expect = 0.53
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +2

Query: 323 GENL-YWYSTTDSTYKLNVDNAMESWFNEYKDYKYAPLKQSDFDKSKPKIGHYTQMAW 493
           GENL Y     DS +  +V   +E+W+NE K Y +     SD        GH+TQ+ W
Sbjct: 284 GENLGYSCVKPDSGHDCSV--TVEAWYNEVKKYDFNSPGFSD------PTGHFTQVVW 333


>SB_8748| Best HMM Match : Astacin (HMM E-Value=0)
          Length = 757

 Score = 30.7 bits (66), Expect = 0.70
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = +2

Query: 323 GENLYWYSTT-DSTYKLNVDNAMESWFNEYKDYKYAPLKQSDFDKSKPKIGHYTQMAW 493
           GENL W     D  Y  +   A   W+NE KDY +       F  +    GH+TQ+ W
Sbjct: 660 GENLAWGCFPGDKVY--SCVKATTEWYNEVKDYDF---NNPGFSGA---TGHFTQVVW 709


>SB_7926| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 30.7 bits (66), Expect = 0.70
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = +2

Query: 323 GENLYWYSTTDSTYKLNVDNAMESWFNEYKDYKYAPLKQSDFDKSKPKIGHYTQMAW 493
           GENL +    DS Y+L+     E W++E + Y++       F       GH+TQ+ W
Sbjct: 24  GENLSF----DSGYELSGGRTTEMWYDEIQKYRF---NNPGFSSG---TGHFTQVVW 70


>SB_41991| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 779

 Score = 30.3 bits (65), Expect = 0.92
 Identities = 18/56 (32%), Positives = 31/56 (55%)
 Frame = +2

Query: 317 QTGENLYWYSTTDSTYKLNVDNAMESWFNEYKDYKYAPLKQSDFDKSKPKIGHYTQ 484
           Q GENLY   +  S+   + ++A + W+ E  DY +     + +++S   IGH+TQ
Sbjct: 731 QYGENLY--GSVSSSGAGSCEDATDLWYAEIADYDW-----NYYNQSTGVIGHFTQ 779


>SB_59700| Best HMM Match : SCP (HMM E-Value=1.6e-14)
          Length = 427

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +2

Query: 317 QTGENLYWYSTTDSTYKLNVDNAMESWFNEYKDYKYA-PLKQSDFDKSKPKIGHYTQMAW 493
           Q GEN    S  +   +L  + A + W+N+   Y Y+ P   SD D        +TQ+ W
Sbjct: 300 QLGENRAKLSAVNYDCELAGEEAAKIWYNQGSHYSYSDPRLNSDTDS-------FTQLVW 352

Query: 494 SE 499
            E
Sbjct: 353 KE 354


>SB_55473| Best HMM Match : SCP (HMM E-Value=1.6e-22)
          Length = 141

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 17/61 (27%), Positives = 30/61 (49%)
 Frame = +2

Query: 311 RFQTGENLYWYSTTDSTYKLNVDNAMESWFNEYKDYKYAPLKQSDFDKSKPKIGHYTQMA 490
           R+  GEN+   S     +  ++ +A++ W+NE + Y+Y      D        GH+TQ+ 
Sbjct: 71  RYYKGENICRMS-----HHFDIGDALQIWYNESESYQY------DNPGFALTTGHFTQIV 119

Query: 491 W 493
           W
Sbjct: 120 W 120


>SB_11891| Best HMM Match : F5_F8_type_C (HMM E-Value=4.7e-35)
          Length = 1171

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 300 WDREDSRLVKICIGIQRPIAHTN*MWTTLWRVG 398
           WD  +  +V+ C G  RPI     +W+ L++ G
Sbjct: 115 WDYMEDNIVRFCEGTIRPILSEEGVWSPLYKSG 147


>SB_4646| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 329

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -2

Query: 186 DT*PLASNCLL*LCPL-TKSLICLHDKFSRDLLWTCP 79
           D  P  +  +L +CP  T+ ++ +  +F+RD+L TCP
Sbjct: 82  DLCPRGTRDMLEMCPRGTRDMLVMCPRFNRDMLETCP 118


>SB_12270| Best HMM Match : Big_2 (HMM E-Value=8.1)
          Length = 112

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 10/19 (52%), Positives = 17/19 (89%)
 Frame = +3

Query: 405 NIKITNMLP*NRVTSTSLN 461
           N+K+TN++P +RVTS ++N
Sbjct: 46  NVKLTNIMPSSRVTSVTIN 64


>SB_27401| Best HMM Match : SCP (HMM E-Value=9e-23)
          Length = 1105

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +2

Query: 371 NVDNAMESWFNEYKDYKYAPLKQSDFDKSKPKIGHYTQMAW 493
           ++++A+  W+NE   Y +A          +P   H+TQM W
Sbjct: 606 SINDAINKWYNEVCKYDFAS------GGPQPGANHFTQMVW 640


>SB_41| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 306

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 147 CPLTKSLICLHDKFSRDLLWTCPIHTTI 64
           CP TK+  C H+K  ++  + CP    +
Sbjct: 235 CPFTKATCCTHNKCCKEGTFCCPTEPAV 262


>SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)
          Length = 2123

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 13/37 (35%), Positives = 24/37 (64%)
 Frame = +2

Query: 383  AMESWFNEYKDYKYAPLKQSDFDKSKPKIGHYTQMAW 493
            A+++W +E KD+ ++  KQ   DK   ++ H+TQ+ W
Sbjct: 1367 AIKAWHDEEKDFDWSSGKQ---DKD-AEVVHFTQVIW 1399


>SB_3100| Best HMM Match : SCP (HMM E-Value=1.5e-20)
          Length = 191

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 15/59 (25%), Positives = 28/59 (47%)
 Frame = +2

Query: 323 GENLYWYSTTDSTYKLNVDNAMESWFNEYKDYKYAPLKQSDFDKSKPKIGHYTQMAWSE 499
           GENL +  ++     L  + A+  W++E   Y +   KQ  +     + GH+T + W +
Sbjct: 74  GENLIYRCSSGPGEVLPAEKAVTDWYDEICMYNF---KQPGY---YSRTGHFTALVWKD 126


>SB_21314| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 586

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = +2

Query: 374 VDNAMESWFNEYKDYKYAPLKQSDFDKSK 460
           VD++++SWF++Y D+       ++F+  K
Sbjct: 288 VDSSVKSWFDDYMDWAKVSKPAANFNAGK 316


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,761,946
Number of Sequences: 59808
Number of extensions: 307456
Number of successful extensions: 649
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)