Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_E23
(499 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g25790.1 68417.m03711 allergen V5/Tpx-1-related family protei... 41 5e-04
At4g25780.1 68417.m03710 pathogenesis-related protein, putative ... 39 0.002
At5g26130.1 68418.m03108 pathogenesis-related protein, putative ... 36 0.020
At5g57625.1 68418.m07199 allergen V5/Tpx-1-related family protei... 34 0.046
At4g30320.1 68417.m04310 allergen V5/Tpx-1-related family protei... 34 0.061
At3g19690.1 68416.m02494 pathogenesis-related protein, putative ... 33 0.081
At4g33720.1 68417.m04788 pathogenesis-related protein, putative ... 33 0.11
At2g14580.1 68415.m01633 pathogenesis-related protein, putative ... 33 0.11
At3g09590.1 68416.m01139 pathogenesis-related protein, putative ... 32 0.19
At5g02730.1 68418.m00214 allergen V5/Tpx-1-related family protei... 31 0.57
At4g33710.1 68417.m04787 pathogenesis-related protein, putative ... 30 0.75
At2g26060.1 68415.m03129 transducin family protein / WD-40 repea... 29 1.3
At2g14610.1 68415.m01643 pathogenesis-related protein 1 (PR-1) i... 29 1.7
At1g21750.2 68414.m02723 protein disulfide isomerase, putative s... 29 2.3
At1g21750.1 68414.m02722 protein disulfide isomerase, putative s... 29 2.3
At4g34210.1 68417.m04856 E3 ubiquitin ligase SCF complex subunit... 28 4.0
At5g09640.1 68418.m01115 sinapoylglucose:choline sinapoyltransfe... 27 7.0
At4g32990.1 68417.m04692 transducin family protein / WD-40 repea... 27 7.0
At4g22745.1 68417.m03282 methyl-CpG-binding domain-containing pr... 27 7.0
At5g08390.1 68418.m00988 transducin family protein / WD-40 repea... 27 9.3
>At4g25790.1 68417.m03711 allergen V5/Tpx-1-related family protein
similar to SP|Q40374 Pathogenesis-related protein PR-1
precursor {Medicago truncatula}; contains Pfam profile
PF00188: SCP-like extracellular protein
Length = 210
Score = 40.7 bits (91), Expect = 5e-04
Identities = 28/94 (29%), Positives = 44/94 (46%)
Frame = +2
Query: 218 MVWDEELXXXXXXXXXQNKNFHNPDKTLGSGRFQTGENLYWYSTTDSTYKLNVDNAMESW 397
+VWD ++ Q + ++ T +G + GENL+W S +D T A+ESW
Sbjct: 94 LVWDVKIASYATWWANQRR--YDCSLTHSTGPY--GENLFWGSGSDFTSTF----AVESW 145
Query: 398 FNEYKDYKYAPLKQSDFDKSKPKIGHYTQMAWSE 499
E K Y + ++ + GHYTQ+ W E
Sbjct: 146 TVEAKSYNH----MTNTCEGDGMCGHYTQIVWRE 175
>At4g25780.1 68417.m03710 pathogenesis-related protein, putative
similar to gene PR-1 protein - Medicago truncatula,
SP|Q40374; contains Pfam profile PF00188: SCP-like
extracellular protein
Length = 190
Score = 39.1 bits (87), Expect = 0.002
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Frame = +2
Query: 218 MVWDEELXXXXXXXXXQNKNFHNPDKTLGSGRFQTGENLYW-YSTTDSTYKLNVDNAMES 394
++WD L Q + ++ +G F GEN+YW Y S +A+ +
Sbjct: 71 LIWDRRLQNYAQGWANQRRGDCALRHSVSNGEFNLGENIYWGYGANWSP-----ADAVVA 125
Query: 395 WFNEYKDYKYAPLKQSDFDKSKPKIGHYTQMAW 493
W +E + Y Y S+ + GHYTQ+ W
Sbjct: 126 WASEKRFYHYG----SNTCDAGQMCGHYTQIVW 154
>At5g26130.1 68418.m03108 pathogenesis-related protein, putative
similar to PR-1a protein [Nicotiana tabacum] GI:19944;
contains Pfam profile PF00188: SCP-like extracellular
protein
Length = 164
Score = 35.5 bits (78), Expect = 0.020
Identities = 23/57 (40%), Positives = 28/57 (49%)
Frame = +2
Query: 323 GENLYWYSTTDSTYKLNVDNAMESWFNEYKDYKYAPLKQSDFDKSKPKIGHYTQMAW 493
GENL W S L+ A++ W NE DY YA SD + GHYTQ+ W
Sbjct: 81 GENLAW-----SGGALSGAEAVKLWVNEKSDYIYASNTCSD----GKQCGHYTQVVW 128
>At5g57625.1 68418.m07199 allergen V5/Tpx-1-related family protein
low similarity to SP|Q40374 Pathogenesis-related protein
PR-1 precursor {Medicago truncatula}; contains Pfam
profile PF00188: SCP-like extracellular protein
Length = 207
Score = 34.3 bits (75), Expect = 0.046
Identities = 27/94 (28%), Positives = 44/94 (46%)
Frame = +2
Query: 218 MVWDEELXXXXXXXXXQNKNFHNPDKTLGSGRFQTGENLYWYSTTDSTYKLNVDNAMESW 397
++WD +L Q + ++ T +G + GENL+W S S++ A++SW
Sbjct: 91 LIWDGKLASYATWWANQRR--YDCSLTHSTGPY--GENLFWGS--GSSWAPGF--AVQSW 142
Query: 398 FNEYKDYKYAPLKQSDFDKSKPKIGHYTQMAWSE 499
E + Y + + D S GHYTQM W +
Sbjct: 143 IVEGRSYNH---NTNSCDGSG-MCGHYTQMVWRD 172
>At4g30320.1 68417.m04310 allergen V5/Tpx-1-related family protein
similar to SP|Q40374 Pathogenesis-related protein PR-1
precursor {Medicago truncatula}; contains Pfam profile
PF00188: SCP-like extracellular protein
Length = 161
Score = 33.9 bits (74), Expect = 0.061
Identities = 30/114 (26%), Positives = 45/114 (39%)
Frame = +2
Query: 152 YRRQLLAKGQVSGHPAATEMKYMVWDEELXXXXXXXXXQNKNFHNPDKTLGSGRFQTGEN 331
Y+ Q + G + A +K + WD +L Q + D L GEN
Sbjct: 26 YQEQFM--GPQNAARAHLRLKPLKWDAKLARYAQWWANQRRG----DCALTHSNGPYGEN 79
Query: 332 LYWYSTTDSTYKLNVDNAMESWFNEYKDYKYAPLKQSDFDKSKPKIGHYTQMAW 493
L+W S + A W +E + Y Y +S+ S+ GHYTQ+ W
Sbjct: 80 LFWGSGN----RWGPSQAAYGWLSEARSYNY----RSNSCNSE-MCGHYTQIVW 124
>At3g19690.1 68416.m02494 pathogenesis-related protein, putative
similar to PR-1a protein GI:19944 GB:X06930 from
[Nicotiana tabacum]; contains Pfam profile PF00188:
SCP-like extracellular protein
Length = 161
Score = 33.5 bits (73), Expect = 0.081
Identities = 25/92 (27%), Positives = 39/92 (42%)
Frame = +2
Query: 218 MVWDEELXXXXXXXXXQNKNFHNPDKTLGSGRFQTGENLYWYSTTDSTYKLNVDNAMESW 397
+VWD+E+ Q N D L GEN+ S+ +++ ++A E W
Sbjct: 45 LVWDDEVAAYAASYANQRIN----DCALVHSNGPFGENIAM-----SSGEMSAEDAAEMW 95
Query: 398 FNEYKDYKYAPLKQSDFDKSKPKIGHYTQMAW 493
NE + Y Y + D + HYTQ+ W
Sbjct: 96 INEKQYYDYD--SNTCNDPNGGTCLHYTQVVW 125
>At4g33720.1 68417.m04788 pathogenesis-related protein, putative
similar to SP|P33154 Pathogenesis-related protein 1
precursor (PR-1) {Arabidopsis thaliana}; contains Pfam
profile PF00188: SCP-like extracellular protein
Length = 163
Score = 33.1 bits (72), Expect = 0.11
Identities = 25/90 (27%), Positives = 37/90 (41%)
Frame = +2
Query: 224 WDEELXXXXXXXXXQNKNFHNPDKTLGSGRFQTGENLYWYSTTDSTYKLNVDNAMESWFN 403
WDE++ Q K D + GEN+ W S+ + A++ W +
Sbjct: 51 WDEKVAAYARNYANQRKG----DCAMKHSSGSYGENIAW-----SSGSMTGVAAVDMWVD 101
Query: 404 EYKDYKYAPLKQSDFDKSKPKIGHYTQMAW 493
E DY Y +DK + GHYTQ+ W
Sbjct: 102 EQFDYDYDS-NTCAWDK---QCGHYTQVVW 127
>At2g14580.1 68415.m01633 pathogenesis-related protein, putative
similar to SP|P33154 Pathogenesis-related protein 1
precursor (PR-1) {Arabidopsis thaliana}; contains Pfam
profile PF00188: SCP-like extracellular protein
Length = 161
Score = 33.1 bits (72), Expect = 0.11
Identities = 36/122 (29%), Positives = 44/122 (36%)
Frame = +2
Query: 128 KDFVNGHNYRRQLLAKGQVSGHPAATEMKYMVWDEELXXXXXXXXXQNKNFHNPDKTLGS 307
+D+VN HN R + G M WDE L Q K D L
Sbjct: 31 QDYVNAHNQARSQIGVGP------------MQWDEGLAAYARNYANQLKG----DCRLVH 74
Query: 308 GRFQTGENLYWYSTTDSTYKLNVDNAMESWFNEYKDYKYAPLKQSDFDKSKPKIGHYTQM 487
R GENL S L+ A+ W NE +Y Y D + GHYTQ+
Sbjct: 75 SRGPYGENL-----AKSGGDLSGVAAVNLWVNEKANYNY------DTNTCNGVCGHYTQV 123
Query: 488 AW 493
W
Sbjct: 124 VW 125
>At3g09590.1 68416.m01139 pathogenesis-related protein, putative
similar to SP|Q05968 Pathogenesis-related protein 1
precursor {Hordeum vulgare}; contains Pfam profile
PF00188: SCP-like extracellular protein
Length = 186
Score = 32.3 bits (70), Expect = 0.19
Identities = 24/92 (26%), Positives = 38/92 (41%)
Frame = +2
Query: 224 WDEELXXXXXXXXXQNKNFHNPDKTLGSGRFQTGENLYWYSTTDSTYKLNVDNAMESWFN 403
WD +L Q K+ D ++ GEN++W+ + + + + WF
Sbjct: 71 WDRDLARFADKWAKQRKS----DCSMIHSGGPYGENIFWHRRKKTW---SPEKVVTRWFE 123
Query: 404 EYKDYKYAPLKQSDFDKSKPKIGHYTQMAWSE 499
E +Y +K + K GHYTQM W E
Sbjct: 124 ERFNYD---VKTNTCAPGK-MCGHYTQMVWRE 151
>At5g02730.1 68418.m00214 allergen V5/Tpx-1-related family protein
low similarity to SP|Q05968 Pathogenesis-related protein
1 precursor {Hordeum vulgare}; contains Pfam profile
PF00188: SCP-like extracellular protein
Length = 205
Score = 30.7 bits (66), Expect = 0.57
Identities = 23/90 (25%), Positives = 40/90 (44%)
Frame = +2
Query: 224 WDEELXXXXXXXXXQNKNFHNPDKTLGSGRFQTGENLYWYSTTDSTYKLNVDNAMESWFN 403
WD+ L Q K+ + T G + GEN++ Y +++ V ++ W +
Sbjct: 78 WDQGLARFASKWAKQRKS--DCKMTHSGGPY--GENIFRYQRSENWSPRRV---VDKWMD 130
Query: 404 EYKDYKYAPLKQSDFDKSKPKIGHYTQMAW 493
E +Y + ++ KS GHYTQ+ W
Sbjct: 131 ESLNYD----RVANTCKSGAMCGHYTQIVW 156
>At4g33710.1 68417.m04787 pathogenesis-related protein, putative
similar to PR-1a protein [Nicotiana tabacum] GI:19944;
contains Pfam profile PF00188: SCP-like extracellular
protein
Length = 166
Score = 30.3 bits (65), Expect = 0.75
Identities = 19/63 (30%), Positives = 32/63 (50%)
Frame = +2
Query: 305 SGRFQTGENLYWYSTTDSTYKLNVDNAMESWFNEYKDYKYAPLKQSDFDKSKPKIGHYTQ 484
+ R + GENL W S+ ++ A+ W E DY + +S+ ++ + GHYTQ
Sbjct: 77 NSRGRYGENLAW-----SSGDMSGAAAVRLWVREKSDYFH----KSNTCRAGKQCGHYTQ 127
Query: 485 MAW 493
+ W
Sbjct: 128 VVW 130
>At2g26060.1 68415.m03129 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to WD40-repeat containing protein Ciao 1
(SP:O76071) [Homo sapiens]
Length = 352
Score = 29.5 bits (63), Expect = 1.3
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = +2
Query: 305 SGRFQTGENLYWYSTTDSTYKLNVDNAMESWFNEYKDYKY 424
+G Q + + W+ T D + + DN ++ W++E D +Y
Sbjct: 160 TGHTQDVKMVQWHPTMDVLFSCSYDNTIKVWWSEDDDGEY 199
>At2g14610.1 68415.m01643 pathogenesis-related protein 1 (PR-1)
identical to GB:M90508 SP|P33154
Length = 161
Score = 29.1 bits (62), Expect = 1.7
Identities = 26/92 (28%), Positives = 36/92 (39%)
Frame = +2
Query: 218 MVWDEELXXXXXXXXXQNKNFHNPDKTLGSGRFQTGENLYWYSTTDSTYKLNVDNAMESW 397
M WDE + Q + N G + GENL W S L+ +A+ W
Sbjct: 49 MQWDERVAAYARSYAEQLRG--NCRLIHSGGPY--GENLAWGSGD-----LSGVSAVNMW 99
Query: 398 FNEYKDYKYAPLKQSDFDKSKPKIGHYTQMAW 493
+E +Y YA + GHYTQ+ W
Sbjct: 100 VSEKANYNYAA------NTCNGVCGHYTQVVW 125
>At1g21750.2 68414.m02723 protein disulfide isomerase, putative
similar to SP|P29828 Protein disulfide isomerase
precursor (PDI) (EC 5.3.4.1) {Medicago sativa}; isoform
contains non-consensus GA donor splice site at intron 9
Length = 487
Score = 28.7 bits (61), Expect = 2.3
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Frame = +2
Query: 353 DSTY-KLNVD-NAMESWFNEYKDYKYAPLKQS 442
D Y K NV+ + +ESW ++KD K AP K+S
Sbjct: 334 DKKYLKTNVEVDQIESWVKDFKDGKIAPHKKS 365
>At1g21750.1 68414.m02722 protein disulfide isomerase, putative
similar to SP|P29828 Protein disulfide isomerase
precursor (PDI) (EC 5.3.4.1) {Medicago sativa}; isoform
contains non-consensus GA donor splice site at intron 9
Length = 501
Score = 28.7 bits (61), Expect = 2.3
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Frame = +2
Query: 353 DSTY-KLNVD-NAMESWFNEYKDYKYAPLKQS 442
D Y K NV+ + +ESW ++KD K AP K+S
Sbjct: 334 DKKYLKTNVEVDQIESWVKDFKDGKIAPHKKS 365
>At4g34210.1 68417.m04856 E3 ubiquitin ligase SCF complex subunit
SKP1/ASK1 (At11), putative E3 ubiquitin ligase; similar
to Skp1 homolog Skp1a GI:3068807 from [Arabidopsis
thaliana]
Length = 152
Score = 27.9 bits (59), Expect = 4.0
Identities = 9/30 (30%), Positives = 20/30 (66%)
Frame = +2
Query: 56 ILAMVVCIGHVHSKSLLNLSCKQIKDFVNG 145
I +++ +++ KSLL+L+C+ + D + G
Sbjct: 90 IFELILAANYLNIKSLLDLTCQTVADMIKG 119
>At5g09640.1 68418.m01115 sinapoylglucose:choline
sinapoyltransferase (SNG2) GC donor splice site at exon
11 and 13; TA donor splice site at exon 10; similar to
serine carboxypeptidase I precursor (SP:P37890) [Oryza
sativa]; wound-inducible carboxypeptidase, Lycopersicon
esculentum, EMBL:AF242849; contains Pfam profile
PF00450: Serine carboxypeptidase; identical to cDNA
sinapoylglucose:choline sinapoyltransferase (SNG2)
GI:15418806
Length = 465
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -1
Query: 97 FTMDVSNTYDHCQNKKRAYGHCSVVCYHERLV 2
F +D SN C N +AY HC Y E ++
Sbjct: 251 FNVDPSNA--RCSNNLQAYDHCMSEIYSEHIL 280
>At4g32990.1 68417.m04692 transducin family protein / WD-40 repeat
family protein HIRA protein, Drosophila melanogaster,
PID:e1250847
Length = 318
Score = 27.1 bits (57), Expect = 7.0
Identities = 10/40 (25%), Positives = 21/40 (52%)
Frame = +2
Query: 305 SGRFQTGENLYWYSTTDSTYKLNVDNAMESWFNEYKDYKY 424
+G + + + W+ T D + + DN ++ W +E +D Y
Sbjct: 136 TGHSEDVKMVLWHPTMDVLFSCSYDNTIKIWCSEDEDGDY 175
>At4g22745.1 68417.m03282 methyl-CpG-binding domain-containing
protein contains Pfam profile PF01429: Methyl-CpG
binding domain
Length = 204
Score = 27.1 bits (57), Expect = 7.0
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +2
Query: 341 YSTTDSTYKLNVDNAMESWFNEYKDYKYAPLKQSDFDKSKPKI 469
Y T + KL N + ++ + +DYKYA L DF+ + PK+
Sbjct: 140 YYITPTGKKLKSRNEIAAFIDANQDYKYALL--GDFNFTVPKV 180
>At5g08390.1 68418.m00988 transducin family protein / WD-40 repeat
family protein similar to katanin p80 subunit
[Strongylocentrotus purpuratus] GI:3005601; contains
Pfam profile PF00400: WD domain, G-beta repeat
Length = 871
Score = 26.6 bits (56), Expect = 9.3
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 221 VWDEELXXXXXXXXXQNKNFHNPDKTLGSGRFQTGEN 331
VW +L ++ +P+KT GSGR Q G N
Sbjct: 386 VWVVDLSRTEPMSGGATQSNSHPEKTSGSGRDQAGLN 422
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,996,797
Number of Sequences: 28952
Number of extensions: 219909
Number of successful extensions: 526
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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