Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_E22
         (343 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0110 + 8500204-8500460,8502544-8502612,8502725-8502790,850...    29   0.95 
03_05_0855 + 28267231-28267603,28267725-28267966,28268071-282681...    27   5.1  
01_06_1342 - 36438869-36439459,36439567-36439627,36440751-364411...    27   5.1  
01_05_0606 - 23607170-23607568,23607738-23607941,23608035-236081...    27   5.1  

>05_03_0110 +
           8500204-8500460,8502544-8502612,8502725-8502790,
           8502885-8502963,8504270-8504390,8504486-8504581,
           8505403-8505515,8505612-8505689,8507777-8507893,
           8508194-8508293,8508463-8508563,8509093-8509110
          Length = 404

 Score = 29.1 bits (62), Expect = 0.95
 Identities = 15/76 (19%), Positives = 27/76 (35%)
 Frame = +2

Query: 2   HEVKATTPLWTAGLAWLLFGERQTRXXXXXXXXXXXXXXXXSATEMQFDXXXXXXXXXXX 181
           H +KA  P + A  +  + G++                   S TE+ F+           
Sbjct: 194 HTIKALEPFFNAAASQFILGQQVPLTLWLSLAPVVIGVSMASLTELSFNWTGFVNAMISN 253

Query: 182 XXXXXQHIYSKRALRD 229
                + +YSK+A+ D
Sbjct: 254 ISFTLRSVYSKKAMTD 269


>03_05_0855 +
           28267231-28267603,28267725-28267966,28268071-28268193,
           28268507-28268623,28268739-28268921,28269017-28269158,
           28269379-28269544,28270194-28270212
          Length = 454

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 23  PLWTAGLAWLLFGER 67
           P+W A  AW L GER
Sbjct: 366 PVWGAAFAWFLLGER 380


>01_06_1342 -
           36438869-36439459,36439567-36439627,36440751-36441130,
           36441955-36442761
          Length = 612

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -1

Query: 130 GGGDADAQRYHHERHLHAARLSL 62
           GGG      +HH  H HA  L L
Sbjct: 11  GGGQGGGAEHHHHHHGHAGHLLL 33


>01_05_0606 -
           23607170-23607568,23607738-23607941,23608035-23608113,
           23608371-23608430,23608514-23608611,23608703-23608891,
           23610670-23611368
          Length = 575

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 139 HLSGGGDADAQRYHHERHLH 80
           H  GGGDA  Q +HH +  H
Sbjct: 13  HGGGGGDARKQHHHHHQLSH 32


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.310    0.134    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,630,941
Number of Sequences: 37544
Number of extensions: 48203
Number of successful extensions: 108
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)