Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_E22
         (343 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g39270.2 68417.m05561 leucine-rich repeat transmembrane prote...    25   10.0 
At4g39270.1 68417.m05562 leucine-rich repeat transmembrane prote...    25   10.0 
At4g28480.1 68417.m04074 DNAJ heat shock family protein contains...    25   10.0 
At4g26400.2 68417.m03800 zinc finger (C3HC4-type RING finger) fa...    25   10.0 
At4g26400.1 68417.m03799 zinc finger (C3HC4-type RING finger) fa...    25   10.0 

>At4g39270.2 68417.m05561 leucine-rich repeat transmembrane protein
           kinase, putative receptor protein kinase erecta,
           Arabidopsis thaliana
          Length = 694

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -1

Query: 334 RR*NRSPVPRHPRGNH 287
           RR NRS    HPRG H
Sbjct: 445 RRRNRSSTSNHPRGRH 460


>At4g39270.1 68417.m05562 leucine-rich repeat transmembrane protein
           kinase, putative receptor protein kinase erecta,
           Arabidopsis thaliana
          Length = 864

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -1

Query: 334 RR*NRSPVPRHPRGNH 287
           RR NRS    HPRG H
Sbjct: 445 RRRNRSSTSNHPRGRH 460


>At4g28480.1 68417.m04074 DNAJ heat shock family protein contains
           Pfam profile PF00226: DnaJ domain; ; similar to DnaJ
           homolog subfamily B member 1 (Heat shock 40 kDa protein
           1) (Heat shock protein 40) (HSP40) (DnaJ protein homolog
           1) (HDJ-1) (Swiss-Prot:P25685) [Homo sapiens] and
           (Swiss-Prot:Q9QYJ3) [Mus musculus]
          Length = 348

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -1

Query: 130 GGGDADAQRYHHERHLHAA 74
           G G   A  +HH  H HAA
Sbjct: 149 GAGGGGAMHHHHHHHHHAA 167


>At4g26400.2 68417.m03800 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 356

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -1

Query: 136 LSGGGDADAQRYHHERHLH 80
           + G    D  R+HH RH H
Sbjct: 101 VDGNDSVDIDRHHHRRHRH 119


>At4g26400.1 68417.m03799 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 356

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -1

Query: 136 LSGGGDADAQRYHHERHLH 80
           + G    D  R+HH RH H
Sbjct: 101 VDGNDSVDIDRHHHRRHRH 119


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.310    0.134    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,178,212
Number of Sequences: 28952
Number of extensions: 28640
Number of successful extensions: 61
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 409426656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)