Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_E21
         (420 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...   175   2e-45
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c...    26   2.7  
SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces pombe...    25   4.8  
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    25   6.3  
SPBC14C8.15 |||triglyceride lipase-cholesterol esterase |Schizos...    24   8.4  

>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score =  175 bits (427), Expect = 2e-45
 Identities = 78/93 (83%), Positives = 85/93 (91%)
 Frame = +2

Query: 137 LNKTKPIWTRNADDITQEEYGDFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFVPRRAPF 316
           LNKTKPIWTRN  ++T+EEY  FYKSLTNDWEDHLAVKHFSVEGQLEFRA+LFVPRRAP 
Sbjct: 265 LNKTKPIWTRNPSEVTKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFRAILFVPRRAPM 324

Query: 317 DLFENKRRKNKIKLYVRRVFIMDNCEELIPEYL 415
           DLFE KR+KN IKLYVRRVFI D+CEELIPE+L
Sbjct: 325 DLFEAKRKKNNIKLYVRRVFITDDCEELIPEWL 357


>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 465

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 293 RVTHGIPTDLLRRSVLQQDDPPSH 222
           R  HGIP DLL R ++    P SH
Sbjct: 335 RSPHGIPVDLLDRMLIISTLPYSH 358


>SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 456

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = -2

Query: 284 HGIPTDLLRRSVLQQDDPPSHWSEI 210
           HGIPTDLL R ++ +  P S  SEI
Sbjct: 349 HGIPTDLLDRLLIVRTLPYSE-SEI 372


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1429

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +2

Query: 152  PIWTRNADDITQEEYGDFYKSLTNDWE 232
            P+W   AD + Q    D  + +  DW+
Sbjct: 1123 PVWNEEADIVVQNRVLDVLELVCYDWD 1149


>SPBC14C8.15 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 297 YLAGLHLIYLKIKDARTRLNFM 362
           YL GLH +Y K K     LN++
Sbjct: 97  YLLGLHRVYKKKKGKIEELNYL 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,268,061
Number of Sequences: 5004
Number of extensions: 22380
Number of successful extensions: 75
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)