Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_E21
         (420 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22016| Best HMM Match : HSP90 (HMM E-Value=0)                      184   4e-47
SB_50934| Best HMM Match : HSP90 (HMM E-Value=0)                      109   7e-25
SB_87| Best HMM Match : HSP90 (HMM E-Value=9.4e-10)                    61   4e-10
SB_7618| Best HMM Match : Sulfotransfer_1 (HMM E-Value=0.53)           30   0.89 
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.6  
SB_52448| Best HMM Match : X (HMM E-Value=1.7)                         27   4.8  
SB_10994| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  
SB_55185| Best HMM Match : Acyl-CoA_dh_M (HMM E-Value=4.5e-16)         27   8.3  
SB_53949| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  

>SB_22016| Best HMM Match : HSP90 (HMM E-Value=0)
          Length = 581

 Score =  184 bits (447), Expect = 4e-47
 Identities = 80/93 (86%), Positives = 90/93 (96%)
 Frame = +2

Query: 137 LNKTKPIWTRNADDITQEEYGDFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFVPRRAPF 316
           LNKTKPIW RNAD+IT EEYG+FYKSLTNDWE+HLAVKHFSVEGQLEFRALLFVP+RAPF
Sbjct: 221 LNKTKPIWMRNADEITTEEYGEFYKSLTNDWEEHLAVKHFSVEGQLEFRALLFVPKRAPF 280

Query: 317 DLFENKRRKNKIKLYVRRVFIMDNCEELIPEYL 415
           DLFE+++++N IKLYVRRVFIMDNCE+LIPEYL
Sbjct: 281 DLFESRKKRNNIKLYVRRVFIMDNCEDLIPEYL 313


>SB_50934| Best HMM Match : HSP90 (HMM E-Value=0)
          Length = 855

 Score =  109 bits (263), Expect = 7e-25
 Identities = 51/95 (53%), Positives = 69/95 (72%), Gaps = 1/95 (1%)
 Frame = +2

Query: 137 LNKTKPIWTRNADDITQEEYGDFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFVPRRAPF 316
           LN  KPIWTR   +I  +EY +FYKS T + ED LA  HF  EG++ FR++LFVP+ AP 
Sbjct: 321 LNTNKPIWTRKPKEIKDDEYNEFYKSFTKESEDPLAKIHFVAEGEVTFRSILFVPKAAPS 380

Query: 317 DLFENKRRK-NKIKLYVRRVFIMDNCEELIPEYLN 418
           +LF +  +K + IKL+VRRVFI DN EE++P+YL+
Sbjct: 381 NLFSDYGKKMDAIKLFVRRVFITDNFEEMMPKYLS 415


>SB_87| Best HMM Match : HSP90 (HMM E-Value=9.4e-10)
          Length = 739

 Score = 60.9 bits (141), Expect = 4e-10
 Identities = 25/91 (27%), Positives = 51/91 (56%)
 Frame = +2

Query: 137 LNKTKPIWTRNADDITQEEYGDFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFVPRRAPF 316
           +N  +P+WT    DI++E++ +FY+ L+  ++      H+  +  L  R++ + P   P 
Sbjct: 270 INTIQPLWTLEPRDISKEQHDEFYQFLSKGYDKPRYYLHYKTDAPLNIRSIFYFPETLP- 328

Query: 317 DLFENKRRKNKIKLYVRRVFIMDNCEELIPE 409
            +F  ++ ++ I LY RRV I    E+++P+
Sbjct: 329 QMFNMQQMESGISLYSRRVLIQAKAEKMLPQ 359


>SB_7618| Best HMM Match : Sulfotransfer_1 (HMM E-Value=0.53)
          Length = 319

 Score = 29.9 bits (64), Expect = 0.89
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
 Frame = +2

Query: 164 RNADDITQEEYGDFYKSLTNDWEDHLAVK----HFSVEGQL 274
           RN DD T   +GD+ K   ND   HL  K    H+ VEG +
Sbjct: 279 RNTDDDTDVWFGDWEKGQINDILSHLGNKVKSSHYIVEGTI 319


>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5834

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = -3

Query: 226  VIGQRFVEISVL-LLCDVIGVSSPDRFSL 143
            VIGQ+ +++S+  L CD+  +   DRFSL
Sbjct: 4416 VIGQKHLKLSIRPLSCDMYAIKWEDRFSL 4444


>SB_52448| Best HMM Match : X (HMM E-Value=1.7)
          Length = 549

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 10/30 (33%), Positives = 21/30 (70%)
 Frame = -3

Query: 244 SKMILPVIGQRFVEISVLLLCDVIGVSSPD 155
           SK++L ++  +FV+++ LL  ++  +S PD
Sbjct: 107 SKVVLQIVSNKFVDLAELLPANLSTMSEPD 136


>SB_10994| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -2

Query: 314 MEPCEVQRVTHGIPTDLLRRSVLQQDDPPSHWSEICRNLRTPP 186
           + P    R +   P  L RRS L+ D  P+  S+IC    +PP
Sbjct: 116 LAPVPPSRRSDLTPVPLSRRSDLRSDWTPAPPSKICGRTPSPP 158


>SB_55185| Best HMM Match : Acyl-CoA_dh_M (HMM E-Value=4.5e-16)
          Length = 647

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 187 GGVR-RFLQISDQ*LGGSSCCKTLLRRRSVGIPCVTLCT 300
           G +R RFL ++DQ L G  C  ++   + V   C+T+ T
Sbjct: 307 GNIRKRFLTVADQLLSGRLCIASM--SQGVSKACITIAT 343


>SB_53949| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1149

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 10/32 (31%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 247 YSKMILPVIGQRFVEISVLLLCDV-IGVSSPD 155
           Y ++++P    RF+  S+  LC++ +G   PD
Sbjct: 327 YIRLVVPSSAARFIAASLTALCNITVGKGDPD 358


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,556,940
Number of Sequences: 59808
Number of extensions: 184287
Number of successful extensions: 442
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 789494848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)