Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_E20
         (153 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    24   2.4  
SPAC22E12.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       22   9.5  

>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1616

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 26   IKVCKASYYYDMEIVETFRIS 88
            I +CK S+YY M   E   IS
Sbjct: 1454 ITLCKGSFYYQMRNTEDMVIS 1474


>SPAC22E12.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 59

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 58 HGNCGNLQNIIKV 96
          HG CG+   I+KV
Sbjct: 33 HGECGDFNTILKV 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 651,200
Number of Sequences: 5004
Number of extensions: 9227
Number of successful extensions: 18
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 2,362,478
effective HSP length: 31
effective length of database: 2,207,354
effective search space used: 41939726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)