Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_E20
         (153 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0171 - 32130598-32130796,32130965-32131355,32131366-32131876     26   3.6  
12_01_0599 - 4892146-4893552                                           25   6.3  

>03_06_0171 - 32130598-32130796,32130965-32131355,32131366-32131876
          Length = 366

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +2

Query: 2   HEELYICLIKVCKASYYYDMEIVETFRIS 88
           HE++ IC I  C+  +Y++ E +     S
Sbjct: 145 HEKVPICPIAACRGKFYFNSESLTDIEFS 173


>12_01_0599 - 4892146-4893552
          Length = 468

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 62  PCHSNKTPYKLLLNIYKV 9
           PCH + TPY L+   +++
Sbjct: 157 PCHISSTPYMLIFGAFEI 174


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,703,822
Number of Sequences: 37544
Number of extensions: 47847
Number of successful extensions: 98
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 14,793,348
effective HSP length: 31
effective length of database: 13,629,484
effective search space used: 258960196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)