Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_E20
         (153 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19050| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.5  
SB_10408| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.3  

>SB_19050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 334

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 48  ITMTWKLWKPSEYH*GFFMSVIITCY 125
           I + W LW        +FM+V+I C+
Sbjct: 158 IAIWWVLWVEDHAAFAYFMTVVIVCF 183


>SB_10408| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 272

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +2

Query: 23  LIKVCKASYYYDMEIVETFRISLRFFYVRHNHML*ITSSYI 145
           LIK+ K  Y+  + + +  +  +   Y  H H L  +SS+I
Sbjct: 103 LIKIIKILYHRHLHLSKLSKSVIIIIYQNHQHPLSSSSSFI 143


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,581,759
Number of Sequences: 59808
Number of extensions: 67610
Number of successful extensions: 89
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 16,821,457
effective HSP length: 30
effective length of database: 15,027,217
effective search space used: 300544340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)