Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_E20
         (153 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81552-5|CAI79202.1|  172|Caenorhabditis elegans Hypothetical pr...    26   4.2  
Z50045-1|CAA90362.1|  174|Caenorhabditis elegans Hypothetical pr...    25   5.5  
L16685-6|ABD63199.1| 1047|Caenorhabditis elegans Trp (transient ...    25   9.6  
L16685-5|AAA28167.3| 1027|Caenorhabditis elegans Trp (transient ...    25   9.6  
AJ276027-1|CAC81654.1| 1027|Caenorhabditis elegans TRP homologou...    25   9.6  
AC024831-7|AAY86310.1|  711|Caenorhabditis elegans Hypothetical ...    25   9.6  

>Z81552-5|CAI79202.1|  172|Caenorhabditis elegans Hypothetical
           protein F56G4.7 protein.
          Length = 172

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 30  KFVRRLITMTWKLWKPSEYH*GFFMSV 110
           KF  + I    KLWK  E+H  F++S+
Sbjct: 92  KFTNKDINEYIKLWKNKEFHRIFYISI 118


>Z50045-1|CAA90362.1|  174|Caenorhabditis elegans Hypothetical
          protein F38B2.2 protein.
          Length = 174

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 2  HEELYICLIKVCKASYYY 55
          +E+L I + K C A YYY
Sbjct: 19 NEQLMIAVTKACPADYYY 36


>L16685-6|ABD63199.1| 1047|Caenorhabditis elegans Trp (transient
           receptor potential)channel family protein 1, isoform b
           protein.
          Length = 1047

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +2

Query: 11  LYICLIKVCKASYYYDMEIVETFRISLRFFYVRHNHML 124
           LY+C I +  ++YY      + +R ++R ++     ML
Sbjct: 498 LYLCTISIRLSAYYIFTYREDPYRYTVRTYWTSEEPML 535


>L16685-5|AAA28167.3| 1027|Caenorhabditis elegans Trp (transient
           receptor potential)channel family protein 1, isoform a
           protein.
          Length = 1027

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +2

Query: 11  LYICLIKVCKASYYYDMEIVETFRISLRFFYVRHNHML 124
           LY+C I +  ++YY      + +R ++R ++     ML
Sbjct: 478 LYLCTISIRLSAYYIFTYREDPYRYTVRTYWTSEEPML 515


>AJ276027-1|CAC81654.1| 1027|Caenorhabditis elegans TRP homologous
           cation channel proteinprotein.
          Length = 1027

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +2

Query: 11  LYICLIKVCKASYYYDMEIVETFRISLRFFYVRHNHML 124
           LY+C I +  ++YY      + +R ++R ++     ML
Sbjct: 478 LYLCTISIRLSAYYIFTYREDPYRYTVRTYWTSEEPML 515


>AC024831-7|AAY86310.1|  711|Caenorhabditis elegans Hypothetical
           protein Y55F3C.9 protein.
          Length = 711

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 93  GFFMSVIITCYKSRPVIFH 149
           GF + +++ C KS  V+FH
Sbjct: 125 GFIIFIVVHCTKSDSVLFH 143


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,553,043
Number of Sequences: 27780
Number of extensions: 50680
Number of successful extensions: 79
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 12,740,198
effective HSP length: 31
effective length of database: 11,879,018
effective search space used: 225701342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)