Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_E20
         (153 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g23260.1 68417.m03353 protein kinase family protein contains ...    25   6.8  
At4g23250.1 68417.m03352 protein kinase family protein contains ...    25   9.0  
At3g51740.1 68416.m05673 leucine-rich repeat transmembrane prote...    25   9.0  

>At4g23260.1 68417.m03353 protein kinase family protein contains
           Pfam domain PF00069: Protein kinase domain
          Length = 579

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 36  VRRLITMTWKLWKPSEYH 89
           V  L+T  WKLW+    H
Sbjct: 470 VNNLVTYVWKLWENKSLH 487


>At4g23250.1 68417.m03352 protein kinase family protein contains
           Pfam domain PF00069: Protein kinase domain
          Length = 998

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 36  VRRLITMTWKLWKPSEYH 89
           V  L+T  WKLW+    H
Sbjct: 551 VNNLVTYVWKLWENKTMH 568


>At3g51740.1 68416.m05673 leucine-rich repeat transmembrane protein
           kinase, putative brassinosteroid-insensitive protein
           BRI1 - Arabidopsis thaliana, PIR:T09356
          Length = 836

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 13  LYMFNKSL*GVLLL*HGNCGNLQNI 87
           +Y+FN  L G + +  GNC  LQN+
Sbjct: 147 VYLFNNRLSGSIPVSLGNCPLLQNL 171


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,226,478
Number of Sequences: 28952
Number of extensions: 44354
Number of successful extensions: 95
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 12,070,560
effective HSP length: 31
effective length of database: 11,173,048
effective search space used: 212287912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)