Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_E19
         (323 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    22   1.8  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    22   1.8  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    20   7.5  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    19   9.9  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    19   9.9  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.8 bits (44), Expect = 1.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 139 IVVSLGQLTYINKGHVTNLFSGEI 210
           + V L  +T+ N   V N+FSGE+
Sbjct: 450 LFVFLTNMTFQNVFAVINVFSGEL 473


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.8 bits (44), Expect = 1.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 139 IVVSLGQLTYINKGHVTNLFSGEI 210
           + V L  +T+ N   V N+FSGE+
Sbjct: 450 LFVFLTNMTFQNVFAVINVFSGEL 473


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 19.8 bits (39), Expect = 7.5
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +3

Query: 117 RFICPSYDCSFVRSADVHKQRACH 188
           RF CP  +  F+RS  + K    H
Sbjct: 374 RFACPICNKRFMRSDHLAKHVKTH 397



 Score = 19.8 bits (39), Expect = 7.5
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -2

Query: 274 DNEEPSISIITLNVN 230
           D+EE S S IT NVN
Sbjct: 411 DSEENSQSDITNNVN 425


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 19.4 bits (38), Expect = 9.9
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +1

Query: 250 WISTVLHCLVKLIK 291
           WI  V  CL KL K
Sbjct: 137 WIRAVRKCLYKLWK 150


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 19.4 bits (38), Expect = 9.9
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +1

Query: 250 WISTVLHCLVKLIK 291
           WI  V  CL KL K
Sbjct: 137 WIRAVRKCLYKLWK 150


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,403
Number of Sequences: 336
Number of extensions: 1331
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  6155018
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)