Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_E19
         (323 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    26   1.2  
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p...    24   6.5  
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos...    23   8.6  

>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = +1

Query: 94  SDLFVIF*DLFAHPTIVVSLGQLTYINKGHVTNLFSGEIIECFVIYLH 237
           +DLF+    LF     ++S G+   +N  H++  F  E++E  ++  H
Sbjct: 183 ADLFLDSLSLFKGLCSLLSAGKSESLNVDHISTTFGLELLESILVNHH 230


>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
           protein 1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 567

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 106 QIGQSILKYYVKNSLNYLKKY 44
           Q  QS+  Y+V N+  YLK Y
Sbjct: 168 QTHQSVHPYHVNNTHQYLKPY 188


>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
           Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 849

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 8/22 (36%), Positives = 18/22 (81%)
 Frame = -2

Query: 307 NCNSKF*SISPDNEEPSISIIT 242
           N +S+F S+S  N++P+I++++
Sbjct: 209 NLSSRFVSLSEFNDQPAIALLS 230


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,161,279
Number of Sequences: 5004
Number of extensions: 19685
Number of successful extensions: 31
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)