Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_E19
         (323 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51354| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.6  
SB_3012| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   8.1  

>SB_51354| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 554

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +1

Query: 253 ISTVLHCLVKLIKTYYYNLV 312
           ISTVLH LV  ++ YY+ LV
Sbjct: 129 ISTVLHLLVVSLERYYHALV 148


>SB_3012| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 33

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -1

Query: 266 RTVDIHYNVKCK 231
           +T D HYNVKCK
Sbjct: 16  KTADQHYNVKCK 27


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,011,678
Number of Sequences: 59808
Number of extensions: 124413
Number of successful extensions: 208
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 438034835
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)