Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_E19
         (323 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g66660.1 68414.m07574 seven in absentia (SINA) protein, putat...    29   0.94 
At4g25420.1 68417.m03656 gibberellin 20-oxidase identical to GI:...    26   6.7  
At4g09120.1 68417.m01505 zinc finger (C3HC4-type RING finger) fa...    25   8.8  

>At1g66660.1 68414.m07574 seven in absentia (SINA) protein, putative
           similar to SIAH2 protein [Brassica napus var. napus]
           GI:7657878; contains Pfam profile PF03145: Seven in
           absentia protein family
          Length = 224

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 102 ICYFLRFICPSYDCSFVRSADVHKQRAC 185
           +C F+R  CP  +C++V S    K  AC
Sbjct: 62  VCKFVRCSCPVSNCNYVSSYSNLKSHAC 89


>At4g25420.1 68417.m03656 gibberellin 20-oxidase identical to
           GI:1109695
          Length = 377

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/28 (42%), Positives = 21/28 (75%)
 Frame = -2

Query: 316 IQLNCNSKF*SISPDNEEPSISIITLNV 233
           +Q N  ++F  I PD+E+PSI+++ L+V
Sbjct: 36  LQANIPNQF--IWPDDEKPSINVLELDV 61


>At4g09120.1 68417.m01505 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 345

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 187 TNLFSGEIIECFVIYLHLTL*WISTVLHCL 276
           TNL +  II   V+ + ++L  +S  LHC+
Sbjct: 44  TNLSADSIIAIVVLAIFISLGMVSCCLHCI 73


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,634,095
Number of Sequences: 28952
Number of extensions: 89951
Number of successful extensions: 152
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 360538848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)