Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_E18
         (379 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    29   0.24 
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc...    28   0.42 
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    26   1.7  
SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo...    24   6.9  
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    24   9.1  
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    24   9.1  

>SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 29.1 bits (62), Expect = 0.24
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -2

Query: 309 FITIFHNSLPSILPLYRFF*DIKRKKK 229
           F T+FH  L SIL  Y FF  + +K K
Sbjct: 170 FCTVFHGYLTSILEAYEFFRGVFKKYK 196


>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 28.3 bits (60), Expect = 0.42
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = -2

Query: 357 IHYIFIELYIEFCIQLFITIFHNSLPSI 274
           ++YI++ +   +C+  F TIF+N + +I
Sbjct: 141 LYYIYVAVSFIYCVMAFFTIFNNHVYTI 168


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 26.2 bits (55), Expect = 1.7
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -2

Query: 201 FLCLQLIMSGLYLVVITYLLHLKTIYTQSLKGPPLI 94
           F CL LI   ++L V  Y   + ++    +K PP +
Sbjct: 497 FACLHLIFLQIHLYVHRYAASISSVPFSHVKSPPTV 532


>SPAC3C7.07c |||arginine-tRNA protein transferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -1

Query: 178 VWIVFSCDYVFITLKNYIHT 119
           +W+   C Y +  +  YIHT
Sbjct: 203 IWLALECGYRYYYMGYYIHT 222


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 311 YS*PFFTILYPPSSLYIDF 255
           YS PFF + +PP S Y  F
Sbjct: 174 YSYPFFFVDHPPLSSYSPF 192


>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 165 LVVITYLLHLKTIYTQSLKGPPLIQF 88
           +V+I +L +L  +YT S    PL+ F
Sbjct: 381 MVIIIFLRNLAELYTTSSLDQPLLTF 406


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,598,916
Number of Sequences: 5004
Number of extensions: 31121
Number of successful extensions: 58
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)