Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_E18
         (379 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC131799-1|AAI31800.1|  447|Homo sapiens 5-hydroxytryptamine (se...    29   5.0  
AF459285-1|AAL66182.1|  447|Homo sapiens 5-hydroxytryptamine rec...    29   5.0  

>BC131799-1|AAI31800.1|  447|Homo sapiens 5-hydroxytryptamine
           (serotonin) receptor 3, family member C protein.
          Length = 447

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 21/44 (47%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
 Frame = -2

Query: 198 LCLQL-IMSGLYLVVITYLLHLKTIYTQSLKGPPLIQFLDNYLL 70
           LCL L ++S L  V ITYLLH+ T  TQ    PP+ ++L + LL
Sbjct: 314 LCLSLMVVSLLETVFITYLLHVAT--TQP---PPMPRWLHSLLL 352


>AF459285-1|AAL66182.1|  447|Homo sapiens 5-hydroxytryptamine
           receptor 3 subunit C protein.
          Length = 447

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 21/44 (47%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
 Frame = -2

Query: 198 LCLQL-IMSGLYLVVITYLLHLKTIYTQSLKGPPLIQFLDNYLL 70
           LCL L ++S L  V ITYLLH+ T  TQ    PP+ ++L + LL
Sbjct: 314 LCLSLMVVSLLETVFITYLLHVAT--TQP---PPMPRWLHSLLL 352


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,527,271
Number of Sequences: 237096
Number of extensions: 949956
Number of successful extensions: 2012
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2012
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2536788584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)