Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_E18
         (379 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106575-4|AAC78172.2|  548|Caenorhabditis elegans Hypothetical ...    29   1.5  
AF348166-1|AAK37544.1| 1221|Caenorhabditis elegans Toll-like rec...    27   3.4  
AC006604-2|AAF39752.2| 1221|Caenorhabditis elegans Toll (drosoph...    27   3.4  
U61951-3|AAB03158.4| 1783|Caenorhabditis elegans Egg laying defe...    26   7.8  
U61951-2|AAM75372.1| 1877|Caenorhabditis elegans Egg laying defe...    26   7.8  
AF023602-1|AAC47755.1| 1783|Caenorhabditis elegans putative L-ty...    26   7.8  

>AF106575-4|AAC78172.2|  548|Caenorhabditis elegans Hypothetical
           protein K04F1.13 protein.
          Length = 548

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -2

Query: 168 YLVVITYLLHLKTIYTQSLKGPPLIQFLDNYLLQTKK 58
           YL  +T+L HL+ +    +   P+++FL N  L+  K
Sbjct: 379 YLEDLTFLKHLEQVVGLKMDSGPIVRFLSNSALKNVK 415


>AF348166-1|AAK37544.1| 1221|Caenorhabditis elegans Toll-like receptor
            TOL-1 protein.
          Length = 1221

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -2

Query: 330  IEFCIQLFITIFHNSLPSILPL 265
            IE    LF T+ H+SLPS LPL
Sbjct: 1176 IEMRSHLFWTLLHSSLPSRLPL 1197


>AC006604-2|AAF39752.2| 1221|Caenorhabditis elegans Toll (drosophila)
            family protein 1 protein.
          Length = 1221

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -2

Query: 330  IEFCIQLFITIFHNSLPSILPL 265
            IE    LF T+ H+SLPS LPL
Sbjct: 1176 IEMRSHLFWTLLHSSLPSRLPL 1197


>U61951-3|AAB03158.4| 1783|Caenorhabditis elegans Egg laying defective
            protein 19,isoform a protein.
          Length = 1783

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 6    RVVFRLIGFIRYEFFIYV-FLFVIGNYLKIELKEAPSNSVCI*FLSVIN 149
            R+ +R+  F+    F YV FL ++ N + +  K  PS+     FL V N
Sbjct: 1105 RLQYRVWWFVTSRAFEYVIFLIIVMNTVSLACKHYPSSRGFEDFLDVFN 1153


>U61951-2|AAM75372.1| 1877|Caenorhabditis elegans Egg laying defective
            protein 19,isoform b protein.
          Length = 1877

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 6    RVVFRLIGFIRYEFFIYV-FLFVIGNYLKIELKEAPSNSVCI*FLSVIN 149
            R+ +R+  F+    F YV FL ++ N + +  K  PS+     FL V N
Sbjct: 1105 RLQYRVWWFVTSRAFEYVIFLIIVMNTVSLACKHYPSSRGFEDFLDVFN 1153


>AF023602-1|AAC47755.1| 1783|Caenorhabditis elegans putative L-type
            calcium channelalpha 1 subunit protein.
          Length = 1783

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 6    RVVFRLIGFIRYEFFIYV-FLFVIGNYLKIELKEAPSNSVCI*FLSVIN 149
            R+ +R+  F+    F YV FL ++ N + +  K  PS+     FL V N
Sbjct: 1105 RLQYRVWWFVTSRAFEYVIFLIIVMNTVSLACKHYPSSRGFEDFLDVFN 1153


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,560,176
Number of Sequences: 27780
Number of extensions: 166765
Number of successful extensions: 381
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 381
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)