BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= S06A01NCLL0001_E18 (379 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AF106575-4|AAC78172.2| 548|Caenorhabditis elegans Hypothetical ... 29 1.5 AF348166-1|AAK37544.1| 1221|Caenorhabditis elegans Toll-like rec... 27 3.4 AC006604-2|AAF39752.2| 1221|Caenorhabditis elegans Toll (drosoph... 27 3.4 U61951-3|AAB03158.4| 1783|Caenorhabditis elegans Egg laying defe... 26 7.8 U61951-2|AAM75372.1| 1877|Caenorhabditis elegans Egg laying defe... 26 7.8 AF023602-1|AAC47755.1| 1783|Caenorhabditis elegans putative L-ty... 26 7.8 >AF106575-4|AAC78172.2| 548|Caenorhabditis elegans Hypothetical protein K04F1.13 protein. Length = 548 Score = 28.7 bits (61), Expect = 1.5 Identities = 12/37 (32%), Positives = 21/37 (56%) Frame = -2 Query: 168 YLVVITYLLHLKTIYTQSLKGPPLIQFLDNYLLQTKK 58 YL +T+L HL+ + + P+++FL N L+ K Sbjct: 379 YLEDLTFLKHLEQVVGLKMDSGPIVRFLSNSALKNVK 415 >AF348166-1|AAK37544.1| 1221|Caenorhabditis elegans Toll-like receptor TOL-1 protein. Length = 1221 Score = 27.5 bits (58), Expect = 3.4 Identities = 13/22 (59%), Positives = 15/22 (68%) Frame = -2 Query: 330 IEFCIQLFITIFHNSLPSILPL 265 IE LF T+ H+SLPS LPL Sbjct: 1176 IEMRSHLFWTLLHSSLPSRLPL 1197 >AC006604-2|AAF39752.2| 1221|Caenorhabditis elegans Toll (drosophila) family protein 1 protein. Length = 1221 Score = 27.5 bits (58), Expect = 3.4 Identities = 13/22 (59%), Positives = 15/22 (68%) Frame = -2 Query: 330 IEFCIQLFITIFHNSLPSILPL 265 IE LF T+ H+SLPS LPL Sbjct: 1176 IEMRSHLFWTLLHSSLPSRLPL 1197 >U61951-3|AAB03158.4| 1783|Caenorhabditis elegans Egg laying defective protein 19,isoform a protein. Length = 1783 Score = 26.2 bits (55), Expect = 7.8 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%) Frame = +3 Query: 6 RVVFRLIGFIRYEFFIYV-FLFVIGNYLKIELKEAPSNSVCI*FLSVIN 149 R+ +R+ F+ F YV FL ++ N + + K PS+ FL V N Sbjct: 1105 RLQYRVWWFVTSRAFEYVIFLIIVMNTVSLACKHYPSSRGFEDFLDVFN 1153 >U61951-2|AAM75372.1| 1877|Caenorhabditis elegans Egg laying defective protein 19,isoform b protein. Length = 1877 Score = 26.2 bits (55), Expect = 7.8 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%) Frame = +3 Query: 6 RVVFRLIGFIRYEFFIYV-FLFVIGNYLKIELKEAPSNSVCI*FLSVIN 149 R+ +R+ F+ F YV FL ++ N + + K PS+ FL V N Sbjct: 1105 RLQYRVWWFVTSRAFEYVIFLIIVMNTVSLACKHYPSSRGFEDFLDVFN 1153 >AF023602-1|AAC47755.1| 1783|Caenorhabditis elegans putative L-type calcium channelalpha 1 subunit protein. Length = 1783 Score = 26.2 bits (55), Expect = 7.8 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%) Frame = +3 Query: 6 RVVFRLIGFIRYEFFIYV-FLFVIGNYLKIELKEAPSNSVCI*FLSVIN 149 R+ +R+ F+ F YV FL ++ N + + K PS+ FL V N Sbjct: 1105 RLQYRVWWFVTSRAFEYVIFLIIVMNTVSLACKHYPSSRGFEDFLDVFN 1153 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 8,560,176 Number of Sequences: 27780 Number of extensions: 166765 Number of successful extensions: 381 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 369 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 381 length of database: 12,740,198 effective HSP length: 73 effective length of database: 10,712,258 effective search space used: 557037416 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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