Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_E18
         (379 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    24   0.52 
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   1.6  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    21   3.6  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    21   6.4  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    21   6.4  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   6.4  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   6.4  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 24.2 bits (50), Expect = 0.52
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 68  KQKNIDKKFISNKSNQPENNP 6
           K+++ DKK IS+KS    N+P
Sbjct: 340 KKESDDKKVISSKSGSKANSP 360


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = -1

Query: 166 FSCDYVFI-TLKNYIHTEFEGASFNSIFR*LPITNKKT*IKNSYLINP 26
           F  +Y ++  + N I     G  FN +   + I N    IKN+  I+P
Sbjct: 369 FPLEYEYVLAVSNRIQKVIYGFDFNDVNFRILIANVNDLIKNTRCISP 416


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
          protein.
          Length = 232

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +3

Query: 24 IGFIRYEFFIYVFLFVI 74
          +G I+Y  FI+ F+F +
Sbjct: 5  MGMIKYLLFIFNFVFAV 21


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 8/35 (22%), Positives = 17/35 (48%)
 Frame = -2

Query: 198 LCLQLIMSGLYLVVITYLLHLKTIYTQSLKGPPLI 94
           LC+QL++    + ++  + H    +     GP +I
Sbjct: 20  LCIQLVVGPYVIGLMNTMTHTTNAFCLPFCGPNVI 54


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 8/35 (22%), Positives = 17/35 (48%)
 Frame = -2

Query: 198 LCLQLIMSGLYLVVITYLLHLKTIYTQSLKGPPLI 94
           LC+QL++    + ++  + H    +     GP +I
Sbjct: 19  LCIQLVVGPYVIGLMNTMTHTTNAFCLPFCGPNVI 53


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 107 GLL*FNF*IITYYKQKNIDKKFI 39
           GLL F+     YY  K  DK F+
Sbjct: 12  GLLAFSLVGAEYYDTKTADKDFL 34


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 107 GLL*FNF*IITYYKQKNIDKKFI 39
           GLL F+     YY  K  DK F+
Sbjct: 12  GLLAFSLVGAEYYDTKTADKDFL 34


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,788
Number of Sequences: 438
Number of extensions: 2332
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9176370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)