Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_E18
         (379 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g38880.1 68418.m04702 expressed protein                             26   7.2  
At3g43890.1 68416.m04698 DC1 domain-containing protein contains ...    26   7.2  

>At5g38880.1 68418.m04702 expressed protein 
          Length = 796

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -2

Query: 138 LKTIYTQSLKGPP-LIQFLDNYLLQTK 61
           +KT+   SL+GPP L+Q +  Y L+ K
Sbjct: 307 MKTVIVNSLRGPPLLLQAIAAYTLRIK 333


>At3g43890.1 68416.m04698 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 661

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = +2

Query: 59  FFVCNR*LSKN*IKGGPFKLCVYIVFKCNKY 151
           FFVCN  + K   KG  F    Y  F C KY
Sbjct: 94  FFVCNDCVLKPRRKGSRFGGSSYFHFNCAKY 124


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,732,850
Number of Sequences: 28952
Number of extensions: 142128
Number of successful extensions: 232
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 517767328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)