Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_E17
(425 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni... 31 0.057
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ... 28 0.53
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 28 0.70
SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomy... 27 1.6
SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz... 27 1.6
SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual 26 2.1
SPCC622.06c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 26 2.1
SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual 26 2.8
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 26 2.8
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch... 25 3.7
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac... 25 3.7
SPAC22E12.01 ||SPAC890.09|triose phosphate transporter |Schizosa... 25 4.9
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 25 6.5
SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom... 25 6.5
SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|c... 25 6.5
SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomy... 25 6.5
SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo... 25 6.5
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 25 6.5
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr... 25 6.5
SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch... 25 6.5
SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual 24 8.6
SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom... 24 8.6
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein... 24 8.6
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 24 8.6
>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 737
Score = 31.5 bits (68), Expect = 0.057
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = -2
Query: 349 LVRGLAVICSLFVFDCVTSSVIISALISDIVSS 251
L+RGL +C + DC T+ ++ +LI DI+++
Sbjct: 617 LLRGLCTLCLIGELDCFTAIDLLDSLIPDIIAA 649
>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 581
Score = 28.3 bits (60), Expect = 0.53
Identities = 21/70 (30%), Positives = 33/70 (47%)
Frame = -2
Query: 310 FDCVTSSVIISALISDIVSSSFFKLSLIRLLRYFRFTLSSFTIIFETSLFSSVSLYFFTC 131
+D ++ S+ IS +VS+ F LS + + SF SL +V YF T
Sbjct: 460 YDLMSKSLFIS-----VVSTLNFSLSFVVAILLVPLQFISFRFNRRLSLLFAVLTYFSTF 514
Query: 130 VFLRNLKGII 101
+FL +L I+
Sbjct: 515 IFLCSLSKIL 524
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 27.9 bits (59), Expect = 0.70
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = -2
Query: 124 LRNLKGIILCCVVILLNMEFHHIDLNIIKIITHE 23
L+NLK +I+ LL+M+F I I+KII HE
Sbjct: 187 LKNLKYLIMDEADRLLDMDFGPIIDKILKIIPHE 220
>SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 396
Score = 26.6 bits (56), Expect = 1.6
Identities = 17/52 (32%), Positives = 32/52 (61%)
Frame = -2
Query: 256 SSSFFKLSLIRLLRYFRFTLSSFTIIFETSLFSSVSLYFFTCVFLRNLKGII 101
S SFF + +R L +F + FTI+ +++L+ + S +F +FL ++G+I
Sbjct: 284 SISFFTVPYLRTLAITQFIILLFTIL-QSALYLTSSYHF--VLFLIFVEGLI 332
>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 702
Score = 26.6 bits (56), Expect = 1.6
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 253 SSFFKLSLIRLLRYFRFTLSSFTII 179
S F ++IRL +Y F L SFT I
Sbjct: 491 SQFPDFNMIRLFKYISFILGSFTAI 515
>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 304
Score = 26.2 bits (55), Expect = 2.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 345 TSREKEIEWLENQLTEHAENE 407
T R +I+W+EN LT AE E
Sbjct: 134 TQRGPQIQWVENILTHKAEAE 154
>SPCC622.06c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 122
Score = 26.2 bits (55), Expect = 2.1
Identities = 18/65 (27%), Positives = 30/65 (46%)
Frame = -2
Query: 238 LSLIRLLRYFRFTLSSFTIIFETSLFSSVSLYFFTCVFLRNLKGIILCCVVILLNMEFHH 59
L +I L F F +S IIF SLF+ + V + I L C++++L
Sbjct: 42 LPIIITLFIFSFVISRM-IIFFISLFNKNTYCELPAVADAIINSIALVCIIVILYFSSRK 100
Query: 58 IDLNI 44
+++ I
Sbjct: 101 LNVEI 105
>SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual
Length = 182
Score = 25.8 bits (54), Expect = 2.8
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +3
Query: 303 QSKTNSEQITARPLTSREKEIEWLENQLTEHAENE 407
Q+ E R L EKE +WL+ +E E E
Sbjct: 148 QAIPKDEDRKPRTLEEMEKEAQWLKGYFSEEQEKE 182
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 25.8 bits (54), Expect = 2.8
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 184 IIFETSLFSSVSLYFFTCVFLRNL 113
+ T+LFS + +YF CVF +L
Sbjct: 672 LFISTALFSIIMIYFVFCVFYISL 695
>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 979
Score = 25.4 bits (53), Expect = 3.7
Identities = 13/36 (36%), Positives = 26/36 (72%)
Frame = +3
Query: 246 KEDDTISLIKAEIITDEVTQSKTNSEQITARPLTSR 353
++D SLI+AE+ +DE + ++T S+ +T++ +SR
Sbjct: 412 RKDYDDSLIEAELESDEESTAET-SKHVTSKKTSSR 446
>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 797
Score = 25.4 bits (53), Expect = 3.7
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Frame = +3
Query: 204 KRKYLKRRINDNL--KKEDDTISLIKAEIITDEVT 302
KRK+ + IND L KKE++ + ++IITDE T
Sbjct: 533 KRKWSE--INDGLQQKKEEEDEDEVPSKIITDEKT 565
>SPAC22E12.01 ||SPAC890.09|triose phosphate transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 25.0 bits (52), Expect = 4.9
Identities = 12/45 (26%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = -2
Query: 202 TLSSFTIIFETSLFSSVSLY--FFTCVFLRNLKGIILCCVVILLN 74
+L + T+ F T SS+ ++ FF+ +F + IL C+ ++++
Sbjct: 144 SLETITLSFYTMCRSSILIFVFFFSVIFRIEMFDWILLCITLVIS 188
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 24.6 bits (51), Expect = 6.5
Identities = 23/104 (22%), Positives = 45/104 (43%)
Frame = +3
Query: 114 KLRKKTHVKKYKETDEXXXXXXXXXXXXXXKRKYLKRRINDNLKKEDDTISLIKAEIITD 293
K RKK K +E+ + + K KRR+N + E+ T D
Sbjct: 945 KDRKKRKSKSKQESSDSGVSEDDEIPLSDARNKTKKRRVNRRVISEEYTF---------D 995
Query: 294 EVTQSKTNSEQITARPLTSREKEIEWLENQLTEHAENETSASLY 425
+ + ++ N E+ +R T EK+ +N +T++ ++ +L+
Sbjct: 996 QDSDAEGNQEEEVSR--TIEEKQ----DNDITDNQDDNKELNLF 1033
>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 601
Score = 24.6 bits (51), Expect = 6.5
Identities = 10/39 (25%), Positives = 20/39 (51%)
Frame = -2
Query: 286 IISALISDIVSSSFFKLSLIRLLRYFRFTLSSFTIIFET 170
I+ ++ D+ S+FF+ + + L + SSF F +
Sbjct: 559 IVESIYEDLKDSNFFETTWVELCNLLKLASSSFESNFHS 597
>SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 438
Score = 24.6 bits (51), Expect = 6.5
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -1
Query: 104 YTLLCGHLAKYGVSPHRFEYNQNN 33
Y+ LCG +A YG+ E+ N+
Sbjct: 132 YSSLCGTIASYGIVVLAMEHRDNS 155
>SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 215
Score = 24.6 bits (51), Expect = 6.5
Identities = 10/41 (24%), Positives = 20/41 (48%)
Frame = +3
Query: 237 NLKKEDDTISLIKAEIITDEVTQSKTNSEQITARPLTSREK 359
N K+ S+ K+ + + K++ + + RP TSR +
Sbjct: 109 NFKQSSTIPSISKSNLTNPPLESEKSSDKALLTRPATSRRR 149
>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 24.6 bits (51), Expect = 6.5
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = -1
Query: 128 LFAQFEGYYTLLCGHLAKYGVSPHRFEYNQNNNT*KPAL 12
+F+QF + ++ HL K G+ R++ NN + +L
Sbjct: 675 IFSQFTTFLDIIDLHLRKAGIGFVRYDGRMNNRAREKSL 713
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 24.6 bits (51), Expect = 6.5
Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Frame = +3
Query: 255 DTISLIKAEI-ITDEVTQSKTNSEQITARP--LTSREKEIEWLENQLTEHAE 401
D I+ +++++ T + + + +E + AR + +EK E LENQL E ++
Sbjct: 1568 DEIARLRSQLESTKQYYEKEKETEILAARSELVAEKEKTKEELENQLNEKSQ 1619
>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
1|||Manual
Length = 599
Score = 24.6 bits (51), Expect = 6.5
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +3
Query: 225 RINDNLKKEDDTISLIKAEIITDEVTQSKTNSEQITARPLTSREKEI 365
+I+ ++ E D + E++TD+ S +SE ITA L R I
Sbjct: 243 QIDVEIQVEVDDDDEEEDEVVTDDDGTSNADSEVITASTLYERHTAI 289
>SPCC4F11.04c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 345
Score = 24.6 bits (51), Expect = 6.5
Identities = 7/28 (25%), Positives = 19/28 (67%)
Frame = +3
Query: 210 KYLKRRINDNLKKEDDTISLIKAEIITD 293
+YL++ +ND++ +D+ + +K + + D
Sbjct: 48 RYLRQVLNDSIPSKDEPLPTLKLDSLND 75
>SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 450
Score = 24.2 bits (50), Expect = 8.6
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = +3
Query: 267 LIKAEIITDEVTQSKTNSEQITARPLTSREKEIEWLENQLTEHAENETSAS 419
+I I+ E + + E++ + +EKEI+ H +ETS+S
Sbjct: 338 VISNGIVVIETEDDEASFEEVDDAKESIQEKEIDETTESKATHDSSETSSS 388
>SPCC1442.02 ||SPCC1450.18|DUF1760 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 562
Score = 24.2 bits (50), Expect = 8.6
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 390 RSVDFQATQFLFLYSLEVSQLSAHCSFSTV 301
+S+ + +FLYSLE+ L + F TV
Sbjct: 500 QSLSYIHQTLVFLYSLEIQNLLSQNQFPTV 529
>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 758
Score = 24.2 bits (50), Expect = 8.6
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -1
Query: 59 HRFEYNQNNN 30
H+FEYNQN N
Sbjct: 39 HQFEYNQNRN 48
>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1096
Score = 24.2 bits (50), Expect = 8.6
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -2
Query: 151 SLYFFTCVFLRNLKGIILCCVVILLNM 71
+LY F +F+ G+I CC+ +LNM
Sbjct: 1074 TLYRFIILFM----GVISCCLTSILNM 1096
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,570,709
Number of Sequences: 5004
Number of extensions: 28323
Number of successful extensions: 121
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -