Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_E17
(425 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0138 - 1069616-1069894,1070056-1070607,1070689-1071046,107... 31 0.29
08_02_0733 + 20546072-20546325,20546924-20547017,20547441-205476... 30 0.90
11_01_0387 + 2922208-2922704,2922956-2923088,2923487-2923549,292... 29 1.6
06_02_0026 + 10729415-10729434,10730049-10730423,10730511-10732338 29 2.1
11_01_0202 + 1606317-1606487,1606743-1606805,1607045-1607116,160... 27 4.8
03_01_0141 + 1116833-1117082,1117658-1118574,1119417-1119579,111... 27 4.8
03_01_0096 + 763850-764027,764873-765189,765262-765433,765513-76... 27 4.8
01_06_1123 + 34671365-34671883,34672366-34672625,34673045-346731... 27 4.8
08_02_1240 + 25504789-25504794,25505421-25505555,25505854-255059... 27 6.3
01_06_1757 - 39678181-39678325,39678472-39678626,39678731-396788... 27 6.3
06_03_1505 + 30635572-30635802,30636977-30637135,30637217-306373... 27 8.3
04_01_0286 + 3800617-3801720,3801945-3801989,3802063-3802203,380... 27 8.3
02_05_0895 - 32593155-32593190,32594228-32594279,32594544-325945... 27 8.3
01_06_1801 - 39954425-39954533,39955289-39955578,39955786-399568... 27 8.3
>12_01_0138 -
1069616-1069894,1070056-1070607,1070689-1071046,
1071214-1071503,1072257-1072360,1072419-1072575,
1073229-1073273,1073636-1073692
Length = 613
Score = 31.5 bits (68), Expect = 0.29
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +3
Query: 216 LKRRINDNLKKEDDT-ISLIKAEIITDEVTQSKTNSEQITARPLTSREKEIEWLENQLTE 392
LK N + +D T I I + +I++ TQ + + ++ R S++ I+ ENQ E
Sbjct: 78 LKNETRKNKELQDTTSIHFIVSNVISELHTQRRYQLKDLSWR---SKDTTIDKKENQEVE 134
Query: 393 HAENETSASL 422
H EN S L
Sbjct: 135 HEENPKSCEL 144
>08_02_0733 +
20546072-20546325,20546924-20547017,20547441-20547624,
20547722-20547831,20548328-20548423,20548525-20548679,
20548743-20548986,20549159-20549314,20549600-20549829,
20552213-20552316,20552420-20552505,20552776-20553066,
20553383-20553475,20553640-20553735,20553838-20553939,
20554196-20554266,20554784-20555035,20555786-20556529,
20557038-20557119,20557192-20557347,20557446-20557655,
20558282-20558665
Length = 1397
Score = 29.9 bits (64), Expect = 0.90
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +3
Query: 246 KEDDTISLIKAEIITDEVTQSKTNSEQITARPLTSREKEIEWLENQL 386
+ D+ S E +T E T +++E+ TAR LT+ EKE+ L +++
Sbjct: 631 EHDECYSHELGETVTVEFTDLPSSTEKKTARRLTAEEKELAELVHRV 677
>11_01_0387 +
2922208-2922704,2922956-2923088,2923487-2923549,
2923564-2923680,2925040-2925399
Length = 389
Score = 29.1 bits (62), Expect = 1.6
Identities = 21/61 (34%), Positives = 34/61 (55%)
Frame = -2
Query: 241 KLSLIRLLRYFRFTLSSFTIIFETSLFSSVSLYFFTCVFLRNLKGIILCCVVILLNMEFH 62
+L+L++LL R T SSF F+ + S V Y+ + +K + LC VV +LN E+
Sbjct: 205 QLTLLQLLH--RTTSSSFE--FKVASSSGVLAYWDAMI----IKSVSLCLVVFILNCEYR 256
Query: 61 H 59
+
Sbjct: 257 Y 257
>06_02_0026 + 10729415-10729434,10730049-10730423,10730511-10732338
Length = 740
Score = 28.7 bits (61), Expect = 2.1
Identities = 22/99 (22%), Positives = 39/99 (39%)
Frame = -2
Query: 349 LVRGLAVICSLFVFDCVTSSVIISALISDIVSSSFFKLSLIRLLRYFRFTLSSFTIIFET 170
L+ A + SL + +I L+ D V S+ + I L Y L + T
Sbjct: 34 LLNATAFVMSLLTIMLLLDKRLIIPLLHDKVPSTTRPVRTIVLKAYISIALVGLAGAYAT 93
Query: 169 SLFSSVSLYFFTCVFLRNLKGIILCCVVILLNMEFHHID 53
T +++ +L +L C+++L + FH D
Sbjct: 94 GSSRESD----TTIYVGSLVFAVLACIIVLKTIIFHQSD 128
>11_01_0202 +
1606317-1606487,1606743-1606805,1607045-1607116,
1607244-1607351,1607497-1607538,1607965-1608018,
1608130-1608255,1608338-1608427,1608735-1608857,
1608963-1609070,1609412-1609573,1609655-1609711,
1609792-1609884
Length = 422
Score = 27.5 bits (58), Expect = 4.8
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +3
Query: 204 KRKYLKRRINDNLKKEDDTISLIKAEIITD--EVTQSKTN 317
K K LK ++ + +K+E T+ LIK + EV SKTN
Sbjct: 46 KEKVLKHKMVEQIKREISTMKLIKHPNVVRIYEVMGSKTN 85
>03_01_0141 +
1116833-1117082,1117658-1118574,1119417-1119579,
1119668-1120497,1120562-1120570
Length = 722
Score = 27.5 bits (58), Expect = 4.8
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +3
Query: 234 DNLKKEDDTISLIKAEIITDEVTQSKTNSEQITARPLTSREKEI 365
D LK DD+++ + E I + V SKT+ + TA P S K +
Sbjct: 563 DTLKSGDDSMNSVVVEPIKERVESSKTDVD--TAAPFYSFVKRL 604
>03_01_0096 +
763850-764027,764873-765189,765262-765433,765513-765586,
765658-765835,765917-766026,766122-766221,766305-766391,
766505-766681,766847-767120,767201-767362,767450-767665,
767744-767781,768044-768102,768214-768339,768415-768540,
768642-768695,768789-768851,768924-768986,769079-769141,
769232-769732
Length = 1045
Score = 27.5 bits (58), Expect = 4.8
Identities = 24/99 (24%), Positives = 42/99 (42%)
Frame = +3
Query: 72 IFSKMTTQQSIIPFKLRKKTHVKKYKETDEXXXXXXXXXXXXXXKRKYLKRRINDNLKKE 251
+ S + T+ S IP++ K TH+ +++ E K K + R +++ +
Sbjct: 668 VISALATKNSHIPYRNSKLTHL--LQDSLELGPAKKQVDTAELQKVKQMLERAKQDIRLK 725
Query: 252 DDTISLIKAEIITDEVTQSKTNSEQITARPLTSREKEIE 368
DD SL K E + EQ + L + KE+E
Sbjct: 726 DD--SLRKLEDNCQNLENKAKGKEQF-YKNLQEKVKELE 761
>01_06_1123 + 34671365-34671883,34672366-34672625,34673045-34673143,
34673237-34675178,34675588-34675658,34676158-34676307,
34676963-34677038,34677131-34677232,34677707-34677855,
34678214-34678364
Length = 1172
Score = 27.5 bits (58), Expect = 4.8
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +3
Query: 207 RKYLKRRINDNLKKEDDTISLIKAEIITDEVTQSKTNSEQITAR 338
R+ R I + +KK D KAE+ + TQSK + Q A+
Sbjct: 1118 REAALREIKERIKKTKDEKKAKKAEVAKSQKTQSKGGATQRGAK 1161
>08_02_1240 +
25504789-25504794,25505421-25505555,25505854-25505964,
25506091-25506183,25506264-25506884,25506970-25507143,
25507239-25507464,25507560-25507651,25507744-25507842,
25507936-25507984,25508071-25508124,25508312-25508484,
25508561-25508632,25508713-25508808,25509032-25509048,
25509704-25509875,25509973-25510071,25510381-25510484,
25510940-25511126,25511212-25511220
Length = 862
Score = 27.1 bits (57), Expect = 6.3
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +3
Query: 210 KYLKRRINDNLKKEDDTISLIKAEIITDEVTQS 308
K LKR+++ + + EDD I +++ I D++ S
Sbjct: 66 KTLKRKLSKSKRSEDDNIKVLRDIIQRDQIINS 98
>01_06_1757 -
39678181-39678325,39678472-39678626,39678731-39678898,
39679532-39679723,39679821-39680000,39680099-39680266
Length = 335
Score = 27.1 bits (57), Expect = 6.3
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +3
Query: 303 QSKTNSEQITARPLTSREKEIE-WLENQL 386
Q K E T PLT R+K+ E W+ +L
Sbjct: 258 QEKQEEELFTRAPLTKRDKQTEKWMRKEL 286
>06_03_1505 +
30635572-30635802,30636977-30637135,30637217-30637328,
30638004-30638123,30638264-30638415,30638938-30638972,
30639077-30639233,30639328-30639381,30639502-30639594,
30639685-30639827,30639939-30640009,30640323-30640453
Length = 485
Score = 26.6 bits (56), Expect = 8.3
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = -2
Query: 256 SSSFFKLSLIRLLRYFRFTLSSFTIIFETSLFSSVSLYFFTCVFLRNLKGIILCCVVI 83
S SFFK+ + Y +S F I+F ++ +V +F +++ GI L VI
Sbjct: 276 SESFFKVPFFGAVSYLTLAVSPFCIVF--AVLWAVHRHFTYAWIGQDILGIALIITVI 331
>04_01_0286 +
3800617-3801720,3801945-3801989,3802063-3802203,
3802368-3802397,3802519-3803025
Length = 608
Score = 26.6 bits (56), Expect = 8.3
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 282 IITDEVTQSKTNSEQITARPLTSREKEIEWLEN 380
+I ++V +S S QI RP TSR + L+N
Sbjct: 83 VILNKVAKSMIWSSQIENRPKTSRNNSVVLLDN 115
>02_05_0895 -
32593155-32593190,32594228-32594279,32594544-32594584,
32594795-32594906,32595195-32595268,32595349-32595587,
32595710-32596678,32596725-32596878,32596957-32597244,
32597393-32597534,32598679-32598752,32598870-32598890
Length = 733
Score = 26.6 bits (56), Expect = 8.3
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = -2
Query: 250 SFFKLSLIRLLRYFRFTLSSFTIIFETSLFSSVSLYFFTCVFLRNLKGII 101
S +K L ++ R R L F F T +S+Y VFLR L ++
Sbjct: 621 SLWKDLLYQIFRAIRSILYGFVAFFSTCNRHRLSIYNHIQVFLRRLSRVL 670
>01_06_1801 -
39954425-39954533,39955289-39955578,39955786-39956838,
39956998-39957263,39957345-39957420,39957525-39957605,
39957676-39957831,39958565-39958669,39958761-39959367,
39959514-39959585,39959802-39959953,39960063-39960240,
39960642-39960745,39960822-39960953,39961036-39961132,
39961280-39961407,39961533-39961592,39962799-39962918,
39963011-39963091,39963173-39963361,39963826-39964024,
39964177-39964257,39964398-39964588,39965226-39965382,
39965986-39966119,39966266-39966334,39966434-39966481,
39966572-39966646,39967112-39967192,39967399-39967461,
39967564-39967623,39967754-39967795,39968777-39968902,
39969027-39969176
Length = 1843
Score = 26.6 bits (56), Expect = 8.3
Identities = 12/50 (24%), Positives = 25/50 (50%)
Frame = +3
Query: 99 SIIPFKLRKKTHVKKYKETDEXXXXXXXXXXXXXXKRKYLKRRINDNLKK 248
S++P++ R + + + K+T++ R+ LKR +NLK+
Sbjct: 550 SLLPYETRYRLYGEWEKDTEQNPIVLAARQTAKLDTRRLLKRLAKENLKQ 599
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,889,739
Number of Sequences: 37544
Number of extensions: 140890
Number of successful extensions: 349
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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