Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_E17
(425 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30) 31 0.40
SB_54236| Best HMM Match : bZIP_1 (HMM E-Value=1.1) 31 0.40
SB_54| Best HMM Match : Actin (HMM E-Value=0) 30 0.92
SB_2574| Best HMM Match : DUF217 (HMM E-Value=0.066) 29 1.2
SB_21610| Best HMM Match : HSF_DNA-bind (HMM E-Value=0.32) 29 1.6
SB_33711| Best HMM Match : PSCyt1 (HMM E-Value=9) 29 2.1
SB_27346| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.8
SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.7
SB_4606| Best HMM Match : HlyIII (HMM E-Value=0.002) 27 6.5
SB_50747| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_36418| Best HMM Match : Ion_trans (HMM E-Value=3.5e-28) 27 6.5
SB_2211| Best HMM Match : DUF349 (HMM E-Value=4.4) 27 8.6
>SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30)
Length = 3071
Score = 31.1 bits (67), Expect = 0.40
Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 12/119 (10%)
Frame = +3
Query: 93 QQSIIPFKLRKKTHVKKYKETDEXXXXXXXXXXXXXXKRKYLKRRINDNLKKEDDT---I 263
QQ ++ ++ +T K E D + LK I+ K+++D I
Sbjct: 1353 QQQLVEMRVLVETSQAKLNEKDNQIQQLLTSKDFLEDEIDNLKAAIDKTEKEKEDLKADI 1412
Query: 264 SLIKAE------IITDE---VTQSKTNSEQITARPLTSREKEIEWLENQLTEHAENETS 413
+KAE +I D + +++T S++I A S K+IE LENQ+T +NE S
Sbjct: 1413 DELKAENIKLNKLINDMEAGIKRTQTESDRI-AFENESNVKKIESLENQITALKKNEQS 1470
>SB_54236| Best HMM Match : bZIP_1 (HMM E-Value=1.1)
Length = 1188
Score = 31.1 bits (67), Expect = 0.40
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +3
Query: 237 NLKKEDDTISLIKAEIITDEVTQSKTNSEQITARPLTSREKEIEWLENQLTEHAEN 404
NL+KE+D++ L E+ SK + + +PL RE ++ E + E A N
Sbjct: 708 NLQKENDSMKLDNFELRNSLNRASKCDGPFLLFKPLKGREVGVDMREQESLERAPN 763
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 29.9 bits (64), Expect = 0.92
Identities = 18/64 (28%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Frame = +3
Query: 231 NDNLKKEDDTISLIKAEIITDEVTQSKTNSEQITARPLTSREKEIEWLENQL--TEHAEN 404
ND + +EDD + L+ +E ++E +S ++E+ +R + ++I +L N+ T+ ++
Sbjct: 1647 NDEISEEDDLLGLVGSESESEEDIESFIDNEETLSRSRSETFEKI-YLSNKSGNTDDFQH 1705
Query: 405 ETSA 416
ET A
Sbjct: 1706 ETVA 1709
>SB_2574| Best HMM Match : DUF217 (HMM E-Value=0.066)
Length = 225
Score = 29.5 bits (63), Expect = 1.2
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = +3
Query: 207 RKYLKRRINDNLKKEDDTISLIKAEIITDEVTQSKTN-SEQITARPLTSREKEIEWLENQ 383
R LK R+N ++ D TISL E + + + + +E+I L + E E LE++
Sbjct: 106 RAQLKSRVNGDVNHNDSTISLSVYEQLKESSEEEIFSLTERIQGLTLANENLEKEVLESR 165
Query: 384 LT-EHAENETSASL 422
E + ET A +
Sbjct: 166 RNIEKSNQETMAGI 179
>SB_21610| Best HMM Match : HSF_DNA-bind (HMM E-Value=0.32)
Length = 425
Score = 29.1 bits (62), Expect = 1.6
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +3
Query: 234 DNLKKEDDTISLIKAEIITDEVTQSKTNSEQITARPLTSREKEIEWLENQLTEHAE 401
D L E++ + I + + Q ++ + P T+ EK+I+ LEN + H E
Sbjct: 205 DKLVSENEWLKKSNESICKERIVQVAQLRTELGSIPDTNPEKKIQELENTIKHHEE 260
>SB_33711| Best HMM Match : PSCyt1 (HMM E-Value=9)
Length = 103
Score = 28.7 bits (61), Expect = 2.1
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +3
Query: 234 DNLKKEDDTISLIKAEIITDEVTQSKTNSEQITARPLTSREKEIEWLEN-QLTEH 395
D ++++ D + +KAEI+T E T S IT RP + + + W+ + LT H
Sbjct: 37 DEIRQKVDNLKAVKAEIVTQE-TLSGAGLRGITLRPY--QLEGVGWMRDCALTGH 88
>SB_27346| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 93
Score = 28.3 bits (60), Expect = 2.8
Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = -2
Query: 256 SSSFFKLS-LIRLLRYFRFTLSSFTIIFETSL 164
S+ FF +S L +L +RF+LSSF +F+ SL
Sbjct: 58 STMFFVISDLAKLNNMYRFSLSSFLRLFQRSL 89
>SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4700
Score = 27.9 bits (59), Expect = 3.7
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = +3
Query: 246 KEDDTISLIKAEIITDEVTQSKTNSEQITARPLTSREKEIEWLENQLTEHAENE 407
+++ T+SL + E + D T EQ+ P S E+E E LE+ T E E
Sbjct: 3826 EDNPTVSLEQEEQLEDNPTVPLEQEEQLEDNPTVSLEQE-EQLEDNPTVPLEQE 3878
Score = 27.9 bits (59), Expect = 3.7
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = +3
Query: 246 KEDDTISLIKAEIITDEVTQSKTNSEQITARPLTSREKEIEWLENQLTEHAENE 407
+++ T+SL + E + D T EQ+ P S E+E E LE+ T E E
Sbjct: 3854 EDNPTVSLEQEEQLEDNPTVPLEQEEQLEDNPTVSLEQE-EQLEDNPTVPLEQE 3906
>SB_4606| Best HMM Match : HlyIII (HMM E-Value=0.002)
Length = 458
Score = 27.1 bits (57), Expect = 6.5
Identities = 18/59 (30%), Positives = 25/59 (42%)
Frame = -2
Query: 304 CVTSSVIISALISDIVSSSFFKLSLIRLLRYFRFTLSSFTIIFETSLFSSVSLYFFTCV 128
C SV +S IS +V ++ + S RYF S F F T +S + CV
Sbjct: 110 CGAISVAVSGAISSLVFITYTEKSKDAKDRYFESHKSQFDSYFRTIRYSYSPMDIAVCV 168
>SB_50747| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 128
Score = 27.1 bits (57), Expect = 6.5
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 312 TNSEQITARPLTSREKEIEWLENQLTEHAENETSAS 419
T+ Q+T P + K + L LT HA+N+ +S
Sbjct: 69 TSPPQVTPLPHSENNKTVRHLGRHLTGHAKNDALSS 104
>SB_36418| Best HMM Match : Ion_trans (HMM E-Value=3.5e-28)
Length = 466
Score = 27.1 bits (57), Expect = 6.5
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = -2
Query: 334 AVICSLFVFDCVTSSVIISALISDIVSSSFFKL-SLIRLLRYFRFTLSSFTIIFETSLFS 158
A+I + + S + +SDIVS +L L+R+L+ R + +S ++FET S
Sbjct: 267 AIIDFIAILPFYISLIFRPGKLSDIVSFPLLRLVRLVRILKLKRHS-TSIKLLFETIYDS 325
Query: 157 SVSL-YFFTCV 128
L F C+
Sbjct: 326 REELQLFLVCI 336
>SB_2211| Best HMM Match : DUF349 (HMM E-Value=4.4)
Length = 101
Score = 26.6 bits (56), Expect = 8.6
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Frame = +3
Query: 216 LKRRINDN--LKKEDDTISLIKAE-IITDEVTQSKTNSEQITARPLTSREKEIEWLENQL 386
L+R++ + L+ E+ T K E I+TD + SEQ + + EK + LE +
Sbjct: 6 LRRKLEEKAILENEEQTKLRKKEEQIVTDLIVNQANMSEQERNKIIEEHEKHLAELETSM 65
Query: 387 T 389
T
Sbjct: 66 T 66
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,231,704
Number of Sequences: 59808
Number of extensions: 196246
Number of successful extensions: 639
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 814166562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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