Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_E17
         (425 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g16550.1 68418.m01937 expressed protein                             30   0.57 
At3g14570.1 68416.m01845 glycosyl transferase family 48 protein ...    30   0.75 
At3g27710.1 68416.m03460 zinc finger protein-related contains si...    28   2.3  
At1g80410.1 68414.m09413 acetyltransferase-related low similarit...    28   2.3  
At1g15600.1 68414.m01875 hypothetical protein                          28   2.3  
At5g53220.1 68418.m06616 expressed protein  ; expression support...    28   3.0  
At4g36520.1 68417.m05185 trichohyalin-related low similarity to ...    28   3.0  
At3g27390.1 68416.m03424 expressed protein                             28   3.0  
At3g13090.1 68416.m01639 ABC transporter, putative similar to MR...    28   3.0  
At5g16730.1 68418.m01959 expressed protein weak similarity to mi...    27   5.3  
At3g20150.1 68416.m02554 kinesin motor family protein contains P...    27   5.3  
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai...    27   7.0  
At3g14180.1 68416.m01792 expressed protein similar to 6b-interac...    27   7.0  
At1g04650.1 68414.m00462 hypothetical protein                          27   7.0  
At5g24470.1 68418.m02884 pseudo-response regulator 5 (APRR5) ide...    26   9.3  
At5g08020.1 68418.m00933 replication protein, putative similar t...    26   9.3  

>At5g16550.1 68418.m01937 expressed protein
          Length = 249

 Score = 30.3 bits (65), Expect = 0.57
 Identities = 20/67 (29%), Positives = 31/67 (46%)
 Frame = -2

Query: 352 LLVRGLAVICSLFVFDCVTSSVIISALISDIVSSSFFKLSLIRLLRYFRFTLSSFTIIFE 173
           LL     V+ +LF      +++IIS LIS  V+  F  L  + L   +   LS    +  
Sbjct: 124 LLTTMALVVFTLFFVAATANAIIISLLISLAVAGGFLALFFLCLTGVYIGALSVAAFVIS 183

Query: 172 TSLFSSV 152
           T+  S+V
Sbjct: 184 TATVSAV 190


>At3g14570.1 68416.m01845 glycosyl transferase family 48 protein
           contains similarity to glucan synthases
          Length = 1973

 Score = 29.9 bits (64), Expect = 0.75
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -2

Query: 250 SFFKLSLIRLLRYFRFTLSSFTIIFETSLFSSVSLYFFTCVFLRNLKGII 101
           SFF LSL  L+      + S   +F  ++F  V   F T   L+ +KGI+
Sbjct: 519 SFFVLSLQALIIMACHDVGSPLQVFNANIFEDVMSIFITSAILKLIKGIL 568


>At3g27710.1 68416.m03460 zinc finger protein-related contains
           similarity to zinc finger proteins and Pfam domain,
           PF01485: IBR domain
          Length = 537

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 20/63 (31%), Positives = 29/63 (46%)
 Frame = +3

Query: 234 DNLKKEDDTISLIKAEIITDEVTQSKTNSEQITARPLTSREKEIEWLENQLTEHAENETS 413
           D    EDD  S  +AE+    VT +K+ S+ I    L + +KEI     +L    EN+  
Sbjct: 17  DENYSEDDNYS--EAEVDLQPVTSTKSTSQVIKKESLVAAQKEILVRVMELLSVKENQAR 74

Query: 414 ASL 422
             L
Sbjct: 75  TLL 77


>At1g80410.1 68414.m09413 acetyltransferase-related low similarity
           to acetyltransferase Tubedown-1 [Mus musculus]
           GI:8497318, N-TERMINAL ACETYLTRANSFERASE GB:P12945 from
           (Saccharomyces cerevisiae); contains Pfam profile
           PF00515 TPR Domain
          Length = 897

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 15/64 (23%), Positives = 31/64 (48%)
 Frame = +3

Query: 216 LKRRINDNLKKEDDTISLIKAEIITDEVTQSKTNSEQITARPLTSREKEIEWLENQLTEH 395
           +K+ +    +  D   SL+K  ++T+ ++   T +E++  R L +    I  L+N+    
Sbjct: 691 VKQLLKLGAENPDSHRSLVKFFLMTESISAPTTEAEKLRWRVLEAERPSISQLQNKSLME 750

Query: 396 AENE 407
           A  E
Sbjct: 751 ANKE 754


>At1g15600.1 68414.m01875 hypothetical protein
          Length = 220

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
 Frame = -2

Query: 313 VFDCVTSSVIISALISDIVSSSFFKLSLIRL----LRYFRFTLSSFTIIFETSLFSSVSL 146
           VF  + SS    +   D  ++ +F L L  L    +RY  F L+   + + T L     +
Sbjct: 138 VFLWILSSKAFDSSALDDTTTQYFWLCLALLTFSCIRYVLFNLTLAMVCYTTPLLLLTPV 197

Query: 145 YFFTCVFLRNLKGIILCCV 89
                + +  LKGI+ C V
Sbjct: 198 VICVLLAVEVLKGIVACIV 216


>At5g53220.1 68418.m06616 expressed protein  ; expression supported
           by MPSS
          Length = 441

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = +3

Query: 219 KRRINDNLKKEDDTISLIKAEIITDEVTQSKTNSEQITARPLTSREKEI-EWLENQLTEH 395
           +RR+N  L  EDD   L     + D  T+ ++  E+      T  E  I E  E++  E 
Sbjct: 97  RRRVNKMLSFEDDGHKLTDVVDLCDSETEQRSEEEEFADVMDTIEEANIGENYEDEDVEA 156

Query: 396 AENETSASL 422
            +  TS+ L
Sbjct: 157 CDANTSSPL 165


>At4g36520.1 68417.m05185 trichohyalin-related low similarity to
            SP|Q07283 Trichohyalin {Homo sapiens}
          Length = 1400

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 19/69 (27%), Positives = 31/69 (44%)
 Frame = +3

Query: 219  KRRINDNLKKEDDTISLIKAEIITDEVTQSKTNSEQITARPLTSREKEIEWLENQLTEHA 398
            K+++ + ++ E+    LI+A    +   + K + EQ   R      KE E L  +  EH 
Sbjct: 828  KKKLREAIELEEKEKRLIEAFERAEIERRLKEDLEQEEMRMRLQEAKERERLHRENQEHQ 887

Query: 399  ENETSASLY 425
            ENE     Y
Sbjct: 888  ENERKQHEY 896


>At3g27390.1 68416.m03424 expressed protein 
          Length = 588

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -2

Query: 178 FETSLFSSVSL--YFFTCVFLRNLKGIILCCVVILL 77
           F  SLF  +    YF   +FL  +KGI+LC +V L+
Sbjct: 7   FRASLFQFLLFLPYFIGLLFLGFIKGIVLCPLVCLV 42


>At3g13090.1 68416.m01639 ABC transporter, putative similar to
           MRP-like ABC transporter [Arabidopsis thaliana]
           GI:2316016; contains Pfam profile: PF00005 ABC
           transporter
          Length = 1466

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
 Frame = -2

Query: 238 LSLIRLLRYFRFTLSSFTIIFETSLFSS---VSLYFFTCVFLRNLKGIILCCVVILLNME 68
           L L+R+   F F +S + ++ +  L+     VS++F     +    G+ LCC  +    E
Sbjct: 123 LFLLRVWWVFFFVVSCYHLVVDFVLYKKQEMVSVHFVISDLVGVCAGLFLCCSCLWKKGE 182

Query: 67  FHHIDL 50
              IDL
Sbjct: 183 GERIDL 188


>At5g16730.1 68418.m01959 expressed protein weak similarity to
           microtubule binding protein D-CLIP-190 [Drosophila
           melanogaster] GI:2773363, SMC2-like condensin
           [Arabidopsis thaliana] GI:14279543
          Length = 853

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 15/41 (36%), Positives = 28/41 (68%), Gaps = 3/41 (7%)
 Frame = +3

Query: 225 RINDNLKKEDDTISLI---KAEIITDEVTQSKTNSEQITAR 338
           +I ++LKK ++ IS +   KA+ + DE+ Q+K  +EQ+T +
Sbjct: 102 QIKEDLKKANERISSLEKDKAKAL-DELKQAKKEAEQVTLK 141



 Score = 26.6 bits (56), Expect = 7.0
 Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
 Frame = +3

Query: 231 NDNLKKEDDTISLIKAEIITDEVTQSKTNSE-QITARPLTSREKEIEWLENQLTE-HAEN 404
           ND L   +  I+ +K  I+T E T +K   + +++ + L S E+E+   E ++ +  +E 
Sbjct: 358 NDKLHDTETEITDLKERIVTLETTVAKQKEDLEVSEQRLGSVEEEVSKNEKEVEKLKSEL 417

Query: 405 ET 410
           ET
Sbjct: 418 ET 419


>At3g20150.1 68416.m02554 kinesin motor family protein contains Pfam
           domain, PF00225: Kinesin motor domain
          Length = 1114

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +3

Query: 237 NLKKEDDTISLIKAEIITDEVTQSKTNSEQITARPLTSRE 356
           NLK +DD  + I  E +T+E   S  +  QI  + L+SR+
Sbjct: 254 NLKIKDDAKNGIYVENLTEEYVDSYEDVAQILMKGLSSRK 293


>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
           Pfam profiles  PF00270:DEAD/DEAH box helicase and
           PF00271:  Helicase conserved C-terminal domain;
           identical to cDNA RH27 helicase, partial GI:4033334
          Length = 633

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -2

Query: 127 FLRNLKGIILCCVVILLNMEFHHIDLNIIKIITHENPHSFL 5
           F++   GI+LC  V    ++F H+D  I++    +NP  ++
Sbjct: 446 FIKAETGILLCTNVAARGLDFPHVDW-IVQYDPPDNPTDYI 485


>At3g14180.1 68416.m01792 expressed protein similar to
           6b-interacting protein 1 (NtSIP1) [Nicotiana tabacum]
           GI:18149189
          Length = 443

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 423 IEMQMFRFQHVRSVDFQATQFLFLYSLEVSQL 328
           +EM+  R + ++ ++ Q  QF     LE+SQL
Sbjct: 376 VEMEKERMKFLKELELQRMQFFVKTQLEISQL 407


>At1g04650.1 68414.m00462 hypothetical protein
          Length = 936

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
 Frame = -2

Query: 256 SSSFFKLSLIRLLRYFRFTLSSFTII----FETSLFSSVSLYFFTCVFLRNLKGIIL 98
           S+ FF+L    LL Y RF+ SSFT I    F T   S+V+++ F    L   K +I+
Sbjct: 68  SNIFFQL----LLDYLRFSASSFTAIGKTCFMTDDASAVTVHKFVSEQLNLTKELIM 120


>At5g24470.1 68418.m02884 pseudo-response regulator 5 (APRR5)
           identical to pseudo-response regulator 5 GI:10281006
           from [Arabidopsis thaliana]
          Length = 667

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -2

Query: 238 LSLIRLLRYFRFTLSSFTIIFETSLFSSVSLYFFTCV-FLRNLKGIILCCVVILLNME 68
           LS+I +  + RF L  F   F    +    + FF    F+  L  I++C V + L++E
Sbjct: 34  LSIITVKTFARFFLDIF---FSPHYYRKNKVLFFALFSFISPLTNILICFVTVSLSLE 88


>At5g08020.1 68418.m00933 replication protein, putative similar to
           replication protein A1 [Oryza sativa] GI:2258469;
           contains InterPro entry IPR004365: OB-fold nucleic acid
           binding domain
          Length = 604

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 292 SVIISALISDIVSSSFFKLSLIRLLRY 212
           +++ + L SDI+S     L LIRLL Y
Sbjct: 55  AMLPATLTSDIISGKIQNLGLIRLLEY 81


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,798,244
Number of Sequences: 28952
Number of extensions: 133408
Number of successful extensions: 380
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 665183504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)