Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_E16
         (492 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0113 + 897970-898038,898148-898271,898811-898896,898996-89...    92   2e-19
03_02_0295 + 7178921-7179451,7180083-7180448,7181316-7181450,718...    29   2.0  
06_01_0629 - 4582045-4582140,4582218-4582480,4582584-4582704,458...    28   3.5  
07_03_0260 + 15928932-15929255,15930174-15930347                       27   8.2  
05_03_0090 - 8330283-8330831                                           27   8.2  

>08_01_0113 +
           897970-898038,898148-898271,898811-898896,898996-899049
          Length = 110

 Score = 92.3 bits (219), Expect = 2e-19
 Identities = 46/109 (42%), Positives = 58/109 (53%)
 Frame = +2

Query: 83  SKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITN 262
           S +E+AC  +ALIL DD + +T EKI+T++KAA + VE YWPGLFAK LE  +V DLI +
Sbjct: 2   SSSEVACTLAALILHDDGIPITSEKIATLVKAANIKVEAYWPGLFAKLLEHRSVDDLILS 61

Query: 263 IGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 409
           +GSG                                   DDDMGF LFD
Sbjct: 62  VGSGGGAAPVAAAAAPAAGGGAAAAPAAEEKKEEAKEESDDDMGFSLFD 110


>03_02_0295 +
           7178921-7179451,7180083-7180448,7181316-7181450,
           7181533-7181606,7181960-7181999,7182178-7182223,
           7182398-7182477,7182585-7182760,7182848-7182973,
           7183338-7183430,7184135-7184260,7184815-7184884,
           7185262-7185344,7186216-7186329,7186884-7186983,
           7187557-7187583
          Length = 728

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 20/58 (34%), Positives = 28/58 (48%)
 Frame = +2

Query: 56  LARITFKMASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKAL 229
           LAR  +K A KA+  C Y AL  + D+  +T E+ S +L +     E  W   F   L
Sbjct: 365 LARQWYKAAVKADPLC-YEALECLVDNYMLTCEEESELLSSLKFGKEDGWLSAFYSCL 421


>06_01_0629 -
           4582045-4582140,4582218-4582480,4582584-4582704,
           4582833-4583171,4583208-4583245,4583355-4583670,
           4583753-4584006,4586417-4586546
          Length = 518

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = -3

Query: 475 ILISNALQKLKWNIPCFKIKLLVKKTEA 392
           +L +N LQKL W++P  ++ +L ++ +A
Sbjct: 488 VLTNNLLQKLVWDVPTQQLAMLHRRRQA 515


>07_03_0260 + 15928932-15929255,15930174-15930347
          Length = 165

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 116 GRSKHKLIQLLMPF*MLYVQVAKR 45
           GR+ HKL+Q+ +PF +L V  A R
Sbjct: 119 GRATHKLLQMYVPFAVLAVIAALR 142


>05_03_0090 - 8330283-8330831
          Length = 182

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 135 MSPLPVRKSQPY*KRLL*MLSRTGLVYLQRPWRA 236
           +SPL  R+S P     +    + GLV + +PWR+
Sbjct: 122 VSPLQGRRSAPVGHLAIRQADKVGLVLVTQPWRS 155


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,310,126
Number of Sequences: 37544
Number of extensions: 168719
Number of successful extensions: 339
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 338
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)