Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_E16
         (492 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)             107   6e-24
SB_56573| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_48164| Best HMM Match : DUF1168 (HMM E-Value=0.19)                  27   6.4  
SB_15235| Best HMM Match : DUF1421 (HMM E-Value=1.5)                   27   6.4  
SB_42730| Best HMM Match : Ank (HMM E-Value=0.00016)                   27   8.4  
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.4  

>SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 110

 Score =  107 bits (256), Expect = 6e-24
 Identities = 54/111 (48%), Positives = 66/111 (59%)
 Frame = +2

Query: 77  MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 256
           MAS +ELACVYSALIL DDDVA+T +KI T++KAA ++VEP+WPGLFAKAL+G N+ DLI
Sbjct: 1   MASTSELACVYSALILHDDDVAITADKIETLVKAAKINVEPFWPGLFAKALQGHNIADLI 60

Query: 257 TNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 409
            + G+                                    DDDMGFGLFD
Sbjct: 61  LSAGA-PGAGGAVAAAPAAGGEAKAEEKKEEAKKEESEEESDDDMGFGLFD 110


>SB_56573| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 641

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 236 CPPRPLQIDQASTAQHLQQPLSVWLR 159
           CPP+PL +   ST +H  Q    ++R
Sbjct: 412 CPPKPLSLSDTSTLRHNSQTSPTFIR 437


>SB_48164| Best HMM Match : DUF1168 (HMM E-Value=0.19)
          Length = 1883

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
 Frame = -1

Query: 270  DPMLVIKSRTLMP--SKAFANRPGQYGSTSTAAAFSMVEIFSPVTATSSSTRIRAE*TQA 97
            D +  + S    P  SK FA +PG      T     +  + S VTA  +S R     T+ 
Sbjct: 1587 DRIKAVSSSVTAPKTSKRFATKPGSSIDAPTGNKHRIKAVSSSVTAPKTSKRFA---TKP 1643

Query: 96   NSAFDAILNVIRASRQKALAQGEQARLTS 10
             S+ DA   +    R KA++    A  TS
Sbjct: 1644 GSSIDAPTGI--KDRIKAVSSSVTAPKTS 1670


>SB_15235| Best HMM Match : DUF1421 (HMM E-Value=1.5)
          Length = 754

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
 Frame = -1

Query: 270 DPMLVIKSRTLMP--SKAFANRPGQYGSTSTAAAFSMVEIFSPVTATSSSTRIRAE*TQA 97
           D +  + S    P  SK FA +PG      T     +  + S VTA  +S R     T+ 
Sbjct: 458 DRIKAVSSSVTAPKTSKRFATKPGSSIDAPTGNKHRIKAVSSSVTAPKTSKRFA---TKP 514

Query: 96  NSAFDAILNVIRASRQKALAQGEQARLTS 10
            S+ DA   +    R KA++    A  TS
Sbjct: 515 GSSIDAPTGI--KDRIKAVSSSVTAPKTS 541


>SB_42730| Best HMM Match : Ank (HMM E-Value=0.00016)
          Length = 999

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = +2

Query: 38  AKAFWRLARITFKMASKAELACVYSALILVDDDVAVTGEKIS 163
           A+  WR+     K   + +  C     +L DDD+A T   ++
Sbjct: 740 ARKEWRVVSSFVKSLEEGKATCSSGLAVLTDDDLATTSRPLT 781


>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = +2

Query: 380 DDDMGFGLFD 409
           DDDMGFGLFD
Sbjct: 753 DDDMGFGLFD 762


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,597,290
Number of Sequences: 59808
Number of extensions: 175476
Number of successful extensions: 458
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1050596726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)