Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_E16
(492 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g00810.2 68417.m00112 60S acidic ribosomal protein P1 (RPP1B)... 85 2e-17
At4g00810.1 68417.m00111 60S acidic ribosomal protein P1 (RPP1B)... 85 2e-17
At1g01100.2 68414.m00013 60S acidic ribosomal protein P1 (RPP1A)... 85 2e-17
At1g01100.1 68414.m00012 60S acidic ribosomal protein P1 (RPP1A)... 85 2e-17
At5g47700.1 68418.m05889 60S acidic ribosomal protein P1 (RPP1C) 84 4e-17
At5g24510.1 68418.m02889 60s acidic ribosomal protein P1, putative 79 1e-15
At3g49460.1 68416.m05406 60S acidic ribosomal protein-related co... 38 0.005
At1g07380.1 68414.m00787 ceramidase family protein contains simi... 28 3.0
At5g45930.1 68418.m05648 magnesium-chelatase subunit chlI, chlor... 28 3.9
At5g05340.1 68418.m00575 peroxidase, putative similar to peroxid... 27 5.2
At4g17720.1 68417.m02646 RNA recognition motif (RRM)-containing ... 27 6.9
At2g31160.1 68415.m03804 expressed protein contains Pfam profile... 27 6.9
>At4g00810.2 68417.m00112 60S acidic ribosomal protein P1 (RPP1B)
similar to acidic ribosomal protein p1
Length = 113
Score = 85.4 bits (202), Expect = 2e-17
Identities = 43/113 (38%), Positives = 59/113 (52%), Gaps = 2/113 (1%)
Frame = +2
Query: 77 MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 256
M++ ELAC Y+ +IL D+ +A+T +KI+T++KAA V++E YWP LFAK E NV DLI
Sbjct: 1 MSTVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLI 60
Query: 257 TNIGSGVXXXXX--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 409
N+G+G D D+GFGLFD
Sbjct: 61 MNVGAGGGGGGAPVSAAAPAAAGGAAAAAPAKEEKKDEPAEESDGDLGFGLFD 113
>At4g00810.1 68417.m00111 60S acidic ribosomal protein P1 (RPP1B)
similar to acidic ribosomal protein p1
Length = 113
Score = 85.4 bits (202), Expect = 2e-17
Identities = 43/113 (38%), Positives = 59/113 (52%), Gaps = 2/113 (1%)
Frame = +2
Query: 77 MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 256
M++ ELAC Y+ +IL D+ +A+T +KI+T++KAA V++E YWP LFAK E NV DLI
Sbjct: 1 MSTVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLI 60
Query: 257 TNIGSGVXXXXX--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 409
N+G+G D D+GFGLFD
Sbjct: 61 MNVGAGGGGGGAPVSAAAPAAAGGAAAAAPAKEEKKDEPAEESDGDLGFGLFD 113
>At1g01100.2 68414.m00013 60S acidic ribosomal protein P1 (RPP1A)
similar to 60S ACIDIC RIBOSOMAL PROTEIN P1 GB:O23095
from [Arabidopsis thaliana]
Length = 112
Score = 85.0 bits (201), Expect = 2e-17
Identities = 43/112 (38%), Positives = 58/112 (51%), Gaps = 1/112 (0%)
Frame = +2
Query: 77 MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 256
M++ ELAC Y+ +IL D+ +A+T +KI+T++KAA V +E YWP LFAK E NV DLI
Sbjct: 1 MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLI 60
Query: 257 TNIGSGVXXXX-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 409
N+G+G D D+GFGLFD
Sbjct: 61 MNVGAGGGGGAPVAAAAPAAGGGAAAAPAAEEKKKDEPAEESDGDLGFGLFD 112
>At1g01100.1 68414.m00012 60S acidic ribosomal protein P1 (RPP1A)
similar to 60S ACIDIC RIBOSOMAL PROTEIN P1 GB:O23095
from [Arabidopsis thaliana]
Length = 112
Score = 85.0 bits (201), Expect = 2e-17
Identities = 43/112 (38%), Positives = 58/112 (51%), Gaps = 1/112 (0%)
Frame = +2
Query: 77 MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 256
M++ ELAC Y+ +IL D+ +A+T +KI+T++KAA V +E YWP LFAK E NV DLI
Sbjct: 1 MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLI 60
Query: 257 TNIGSGVXXXX-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 409
N+G+G D D+GFGLFD
Sbjct: 61 MNVGAGGGGGAPVAAAAPAAGGGAAAAPAAEEKKKDEPAEESDGDLGFGLFD 112
>At5g47700.1 68418.m05889 60S acidic ribosomal protein P1 (RPP1C)
Length = 113
Score = 84.2 bits (199), Expect = 4e-17
Identities = 43/113 (38%), Positives = 58/113 (51%), Gaps = 2/113 (1%)
Frame = +2
Query: 77 MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 256
M++ ELAC Y+ +IL D+ +A+T +KI+T++KAA V +E YWP LFAK E NV DLI
Sbjct: 1 MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLI 60
Query: 257 TNIGSGVXXXX--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 409
N+G+G D D+GFGLFD
Sbjct: 61 MNVGAGGGGGAPVAAAAPAAGGGAAAAAPAAEEKKKDEPAEESDGDLGFGLFD 113
>At5g24510.1 68418.m02889 60s acidic ribosomal protein P1, putative
Length = 111
Score = 79.4 bits (187), Expect = 1e-15
Identities = 36/64 (56%), Positives = 46/64 (71%)
Frame = +2
Query: 83 SKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITN 262
S +ELAC Y+ALIL DD + +T E IS ++K A V+VE YWP LFAK E N+ DLI N
Sbjct: 2 STSELACTYAALILHDDGIEITAENISKLVKTANVNVESYWPSLFAKLCEKKNIDDLIMN 61
Query: 263 IGSG 274
+G+G
Sbjct: 62 VGAG 65
>At3g49460.1 68416.m05406 60S acidic ribosomal protein-related
contains weak similarity to Swiss-Prot:52855 60S acidic
ribosomal protein P1 (L12) [Zea mays]
Length = 46
Score = 37.5 bits (83), Expect = 0.005
Identities = 20/41 (48%), Positives = 28/41 (68%)
Frame = +2
Query: 92 ELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGL 214
ELAC Y+AL+L D VT +ST++K A +++E YWP L
Sbjct: 5 ELACTYAALLLHDH---VT---MSTLVKTANLNIESYWPSL 39
>At1g07380.1 68414.m00787 ceramidase family protein contains
similarity to mitochondrial ceramidase [Homo sapiens]
gi|9246993|gb|AAF86240
Length = 779
Score = 28.3 bits (60), Expect = 3.0
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 47 FWRLARITFKMASKAELACVYSALILVD 130
FWRL R K K ++ C Y IL+D
Sbjct: 479 FWRLVRNVLKTPDKKQIDCHYPKPILLD 506
>At5g45930.1 68418.m05648 magnesium-chelatase subunit chlI,
chloroplast, putative / Mg-protoporphyrin IX chelatase,
putative similar to SP|P161127 from Arabidopsis
thaliana, SP|P93162 from Glycine max, SP|O22436 from
Nicotiana tabacum; non-consensus AA donor splice site at
exon 1, TG acceptor splice site at exon 2
Length = 418
Score = 27.9 bits (59), Expect = 3.9
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +2
Query: 74 KMASKAELACVYSALILVDDDVAVTGEKIS---TILKAAAVDVEPYWPGLFAKALEGI 238
K+ EL+ + + + +VD + T +++ I KA V+ + PGL AKA GI
Sbjct: 158 KVQKGEELSVIETKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGI 215
>At5g05340.1 68418.m00575 peroxidase, putative similar to peroxidase
[Nicotiana tabacum] gi|5381253|dbj|BAA82306; similar to
Peroxidase P7 [Brassica rapa (Turnip)] SWISS-PROT:P00434
Length = 324
Score = 27.5 bits (58), Expect = 5.2
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -1
Query: 228 KAFANRPGQYGSTSTAAAFSMVEIFSPVTATSSSTR 121
+ ++N P + S TAA M +I SP+T +S R
Sbjct: 283 RGYSNNPSSFNSDFTAAMIKMGDI-SPLTGSSGEIR 317
>At4g17720.1 68417.m02646 RNA recognition motif (RRM)-containing
protein
Length = 313
Score = 27.1 bits (57), Expect = 6.9
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +2
Query: 53 RLARITFKMASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEP 199
+LA +TFK AE A + S +VD V V+ + A +EP
Sbjct: 43 KLAYVTFKDLQGAETAVLLSGATIVDSSVIVSMAPDYQLSPEALASLEP 91
>At2g31160.1 68415.m03804 expressed protein contains Pfam profile
PF04852: Protein of unknown function (DUF640)
Length = 219
Score = 27.1 bits (57), Expect = 6.9
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = -1
Query: 252 KSRTLMPSKAFANRPGQYGSTSTAAAFSMVEIFSPVTATSSSTRIRAE 109
K+R + K RP STS+++A + + F + TSS+T+++ E
Sbjct: 171 KARGVSYEKKKRKRPLPSSSTSSSSAVASHQQFQMLPGTSSTTQLKFE 218
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,175,065
Number of Sequences: 28952
Number of extensions: 128192
Number of successful extensions: 297
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 292
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 858708096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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