Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_E14
         (300 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharom...    69   2e-13
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    29   0.19 
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc...    27   0.45 
SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2...    27   0.59 
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   1.4  
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi...    26   1.4  
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...    25   1.8  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    25   3.1  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    24   5.5  
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c...    24   5.5  
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    24   5.5  
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    23   7.3  
SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter |Schizo...    23   9.6  
SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|...    23   9.6  
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    23   9.6  
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S...    23   9.6  
SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces pomb...    23   9.6  
SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar...    23   9.6  
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    23   9.6  

>SPAC890.04c |||ribosome biogenesis protein Ytm1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 68.5 bits (160), Expect = 2e-13
 Identities = 34/93 (36%), Positives = 55/93 (59%)
 Frame = +3

Query: 9   AVSDSPYAIQSNIESSELNSLINALLKETAPTVEKAIEFDFLVCGELLCSSLSEHLQEKG 188
           AV D+P  + ++++   L+ ++N LLK   PT      FDFLV G+LL ++L E++ + G
Sbjct: 23  AVGDTPIFVPTSLKRYGLSQIVNHLLKTEKPT-----PFDFLVQGQLLKTTLDEYIVQNG 77

Query: 189 VSTEDTIEIEYLVRFPAPTPQDCLMHDDWVSAV 287
           +STE  ++IEY+     P       HDDW+S +
Sbjct: 78  LSTESILDIEYIQSTLPPAYLASFSHDDWISGI 110


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 28.7 bits (61), Expect = 0.19
 Identities = 21/66 (31%), Positives = 32/66 (48%)
 Frame = -3

Query: 286  TADTQSSCIKQSCGVGAGNLTRYSISIVSSVDTPFSCKCSDSDEHNSSPHTRKSNSMAFS 107
            T  + S+ I  S  +G+ ++  Y+ SIVSSV    S   S     +S+  T  S+    S
Sbjct: 3478 TPISSSTVITSSVVIGSSSVLSYASSIVSSVSLNSSLLSSSGGFSSSAFSTGSSSFSLTS 3537

Query: 106  TVGAVS 89
              G+VS
Sbjct: 3538 ENGSVS 3543


>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 430

 Score = 27.5 bits (58), Expect = 0.45
 Identities = 14/61 (22%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = -3

Query: 211 SIVSSVDTPFSCKCSDS--DEHNSSPHTRKSNSMAFSTVGAVSFNNALIKELSSDDSILL 38
           ++++SV    + +  D+  +    +P   +++S A + V    FN+ L+   S+D ++ L
Sbjct: 249 ALLASVSDDCTLQIHDTRLNPEEEAPKVIQAHSKAINAVAINPFNDYLLATASADKTVAL 308

Query: 37  W 35
           W
Sbjct: 309 W 309


>SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2-C
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 176

 Score = 27.1 bits (57), Expect = 0.59
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -3

Query: 166 DSDEHNSSPHTRKSNSMAFSTVGAVSFNNALIKELSSD 53
           DSD  N +PHT   NS   S+ G     +++ K L S+
Sbjct: 2   DSDMQNQNPHTNSKNS---SSAGMAVDGHSVTKRLRSE 36


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 20/65 (30%), Positives = 30/65 (46%)
 Frame = -3

Query: 205 VSSVDTPFSCKCSDSDEHNSSPHTRKSNSMAFSTVGAVSFNNALIKELSSDDSILLWIAY 26
           +SS+ +      S S    SS HT + +++   TV  VS  ++     S+  SILL I  
Sbjct: 441 LSSLSSKPILTASSSSLLTSSSHTYERSTVYVVTVETVSSGSSTYASQSTQTSILLVIVG 500

Query: 25  GLSET 11
             S T
Sbjct: 501 DSSST 505


>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = -3

Query: 202 SSVDTPFSCKCSDSDEHNSSPHTRKSNSMAFSTVGAVSFNNALIKELSSDDS 47
           SS D+  S   SDS+  +SS  +  S++ + S   + S ++    E SS+DS
Sbjct: 248 SSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSSDSSDSESESSSEDS 299


>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = +3

Query: 60  LNSLINALLKETAPTVEKAIEFDFLVCGELLCSSLSEHLQEK 185
           +N +I  L K T     +     +  CG ++ +   +HLQE+
Sbjct: 612 INEIIRNLAKTTEDLTPQQTHTFYEACGYMISAQPQKHLQER 653


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 13/53 (24%), Positives = 24/53 (45%)
 Frame = +3

Query: 9   AVSDSPYAIQSNIESSELNSLINALLKETAPTVEKAIEFDFLVCGELLCSSLS 167
           ++  SP  I++ I    + +++NAL   T+      ++   L     LC S S
Sbjct: 573 SLKTSPNIIETIISEDLITTIVNALTNSTSQNKSMHLQVQLLHIISSLCQSSS 625


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
 Frame = +3

Query: 24   PYAIQSNIESS-ELNSLINALLKETAPTVEKAIEFDFLVCGELLCSSL 164
            PY     + +  EL+ L+N  L   A       +  FL+C +  C  L
Sbjct: 1383 PYTSMQEVPADHELHELVNQFLTGVASINHPIADHVFLLCAQECCRIL 1430


>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 571

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -3

Query: 205 VSSVDTPFSCKCSDSDEHNSSPHTRKSNSMAFSTVGAVSFN 83
           VS+ +   +C+CS S+ H S+      N ++  T   +S N
Sbjct: 30  VSNENGCINCRCSPSEPHESANVDESVNKLS-KTFSKLSLN 69


>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
           Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = -3

Query: 154 HNSSPHTRKSNSMAFSTVGAVSFNNALIKELSSDDSILLWIAY 26
           HN SP      +M    +GA+++N     +L   D++L  + Y
Sbjct: 706 HNQSPRNTYQCAMGKQAIGAIAYN-----QLQRIDTLLYLMVY 743


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -1

Query: 51  ILYYFGLHMDYLKQPS 4
           +LY+F +H DY++  S
Sbjct: 530 LLYFFSMHKDYIEAVS 545


>SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 572

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 8/30 (26%), Positives = 17/30 (56%)
 Frame = -1

Query: 198 QLIHLSLANVLIVTSTTVPHIPESRIQWPF 109
           +++ + +A VL++      H P S++ W F
Sbjct: 129 EMVIVIIATVLVIAMPKSIHSPLSKMMWVF 158


>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 456

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 273 NHHASNNPVVLVQETSPDTLF 211
           N H SN+ ++   E  PDT F
Sbjct: 308 NSHDSNSTIICEPEYPPDTSF 328


>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1010

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 156 SSLSEHLQEKGVSTEDTIEIEYLVRFP 236
           S LSE   + G S  D +++EY  R P
Sbjct: 393 SRLSEPFLDIGCSKIDRVQVEYFRRNP 419


>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 517

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 24  PYAIQSNIESSELNSLINALLKETAPTVE 110
           P  +QSN  SSE     NA  +E  PT++
Sbjct: 253 PSNVQSNSSSSENVPKPNAETQEDLPTID 281


>SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 477

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 237 APTPQDCLMHDDWVSAVHTHN 299
           A  P+D +M   +   VHTHN
Sbjct: 93  AEPPEDVIMFTAYGLGVHTHN 113


>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
           Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 205

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 138 CGELLCSSLSEHLQEKGV 191
           CG L CS+ ++ L++K V
Sbjct: 167 CGHLFCSTCAKELRKKTV 184


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -3

Query: 61  SSDDSILLWIAYGLSETAL 5
           S D+S++LW  YG ++T +
Sbjct: 361 SFDNSMVLWCPYGKNKTLI 379


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,352,578
Number of Sequences: 5004
Number of extensions: 25967
Number of successful extensions: 104
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)