Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_E14
(300 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1163 - 24439976-24440023,24440562-24440597,24440932-244410... 65 1e-11
11_06_0571 - 25071440-25071607,25071711-25072383,25072449-25073242 30 0.38
11_07_0012 + 27346844-27346949,27347152-27347756 29 0.67
09_02_0269 - 6527150-6527754,6527957-6528062 29 0.67
10_08_0762 - 20410681-20411834,20411999-20412098,20412200-204122... 28 1.2
09_06_0267 + 21938300-21938371,21938963-21939235,21940665-219412... 28 1.2
07_01_0123 - 927691-929223,930050-930268 28 1.6
01_01_0903 - 7103091-7103120,7104092-7104651,7105208-7105328,710... 27 2.7
12_02_0393 - 18550972-18551562,18551864-18552005,18552164-185523... 27 3.6
08_02_1369 - 26445725-26445812,26446443-26446529,26446720-264469... 27 3.6
08_02_1041 - 23876849-23876959,23877853-23878046,23878621-238786... 27 3.6
03_05_0071 - 20491521-20492813 27 3.6
01_06_1491 - 37739027-37740153,37740318-37741289,37741641-37741845 26 6.3
12_01_0722 + 6355972-6359031 25 8.3
07_01_0956 + 8029297-8030285,8033204-8033330,8033350-8033640 25 8.3
05_03_0654 - 16646717-16647230,16647472-16647633,16648004-166482... 25 8.3
>07_03_1163 -
24439976-24440023,24440562-24440597,24440932-24441018,
24441349-24441492,24441782-24441916,24442215-24442279,
24442395-24442477,24442607-24442642,24443343-24443449,
24443558-24443658,24443750-24443909
Length = 333
Score = 64.9 bits (151), Expect = 1e-11
Identities = 39/91 (42%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Frame = +3
Query: 30 AIQSNIESSELNSLINALLKETAPTVEKAIEFDFLVCGELLCSSLSEHLQEKGVSTEDTI 209
A+ +++ L+ ++N+LL +P +A FDFLV GEL+ L E L KG+S E +
Sbjct: 33 AVPADLTRMGLSEIVNSLLLAASPD-HQAQPFDFLVDGELVRLPLQEFLLAKGISVERVL 91
Query: 210 EIEYLVRFPAPTPQ-DCLMHDDWVSAVHTHN 299
E+EY V+ AP Q D HDDWVSAV N
Sbjct: 92 ELEY-VKAVAPRKQEDPCPHDDWVSAVDGSN 121
>11_06_0571 - 25071440-25071607,25071711-25072383,25072449-25073242
Length = 544
Score = 29.9 bits (64), Expect = 0.38
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = -1
Query: 300 YCEYGQLIPNHHASNNPVVLVQETSPDTLFL*YLQLIHLSLANVLIVTSTTVPHI-PESR 124
Y + +L H +S+ V +V + + L + Y +L L A ++ V H+ PESR
Sbjct: 230 YYKDNELWRQHGSSDELVHMVYKLADIHLSMIYDRLALLPRAEDALLYKQIVGHVHPESR 289
Query: 123 IQWPFQLLVQSLLTM 79
++W QL +++ M
Sbjct: 290 VEWSGQLQQFNMIDM 304
>11_07_0012 + 27346844-27346949,27347152-27347756
Length = 236
Score = 29.1 bits (62), Expect = 0.67
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -3
Query: 268 SCIKQSCGVGAGNLTRYSISIVSSVDTPFSCKCS 167
+C + CG+G G+L + ++ + SS + CK S
Sbjct: 4 ACNNRFCGMGQGSLAKINLRVSSSYEDRIHCKDS 37
>09_02_0269 - 6527150-6527754,6527957-6528062
Length = 236
Score = 29.1 bits (62), Expect = 0.67
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -3
Query: 268 SCIKQSCGVGAGNLTRYSISIVSSVDTPFSCKCS 167
+C + CG+G G+L + ++ + SS + CK S
Sbjct: 4 ACNNRFCGMGQGSLAKINLRVSSSYEDRIHCKDS 37
>10_08_0762 - 20410681-20411834,20411999-20412098,20412200-20412298,
20412563-20414133,20415080-20415128
Length = 990
Score = 28.3 bits (60), Expect = 1.2
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = -3
Query: 205 VSSVDTPFSCKCSDSDEHNSSPHTRKSNSMAFSTVGAVSFN 83
VS +D+P CSD D +P ++ A + G+ N
Sbjct: 900 VSGLDSPGDATCSDEDNGRKAPSDEVNDKTAVQSEGSFPMN 940
>09_06_0267 +
21938300-21938371,21938963-21939235,21940665-21941202,
21941288-21941490,21941603-21941827
Length = 436
Score = 28.3 bits (60), Expect = 1.2
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = -3
Query: 169 SDSDEHNSSPHTRKSNSMAFSTVGAVSFNNALIKELSSD---DSILLWIAY 26
+DS E + +K+N A S+ + NA++K LS + S+LLW +
Sbjct: 192 TDSSETSQLLSAKKTNPAAHSSKTEIGGRNAILKLLSPNLIRSSLLLWTVF 242
>07_01_0123 - 927691-929223,930050-930268
Length = 583
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 30 AIQSNIESSELNSLINALLKETAPTVEKAIE 122
AI S++ S ++ L+N K T PTVE+ ++
Sbjct: 85 AILSDLTSRSISFLVNKCSKPTTPTVEERLQ 115
>01_01_0903 -
7103091-7103120,7104092-7104651,7105208-7105328,
7105545-7106567
Length = 577
Score = 27.1 bits (57), Expect = 2.7
Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = -3
Query: 175 KCSDSDEHNSSPHTRKSN-SMAFSTV 101
K +D H SSP++RKSN S+ STV
Sbjct: 182 KVQQNDAHMSSPYSRKSNVSLYDSTV 207
>12_02_0393 -
18550972-18551562,18551864-18552005,18552164-18552382,
18552733-18552828,18552923-18553035,18553299-18553510,
18553603-18553700,18554283-18554314,18554984-18555068,
18555853-18555914
Length = 549
Score = 26.6 bits (56), Expect = 3.6
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 162 LSEHLQEKGVSTEDTIEIEYLVRFPAPTPQDCLMH 266
L + L +ST E+EY+++FP + D L H
Sbjct: 147 LKQQLLSNKLSTSAQSEVEYVLKFPLHSTLDRLEH 181
>08_02_1369 -
26445725-26445812,26446443-26446529,26446720-26446928,
26447501-26447583,26447672-26447720,26447800-26447959,
26448795-26448891,26449424-26449535,26449637-26449702,
26450135-26450206,26450413-26450487,26451139-26451266,
26451551-26451772,26452084-26452355,26452447-26452543,
26452633-26452738,26454834-26455220
Length = 769
Score = 26.6 bits (56), Expect = 3.6
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = -3
Query: 160 DEHNSSPHTRKSNSMAFSTVGAVSFNNALIKELSSDDSILLWIA 29
D+HNS HT+K N+MA V + D +LLW A
Sbjct: 491 DDHNSVGHTQKINAMA---VNKWQSCLVVTSGAKGDGKLLLWNA 531
>08_02_1041 -
23876849-23876959,23877853-23878046,23878621-23878691,
23878956-23879009,23879051-23879187
Length = 188
Score = 26.6 bits (56), Expect = 3.6
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +3
Query: 90 ETAPTVEKAIEF--DFLVCGELLCSSLSEHLQEKGVSTEDTIEIEYL 224
ETA VE A E E L S++++HL E G + +IEY+
Sbjct: 89 ETARNVETAAEVVEQIAEVTEKLASNVADHLPENGCLQKVVEKIEYI 135
>03_05_0071 - 20491521-20492813
Length = 430
Score = 26.6 bits (56), Expect = 3.6
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +3
Query: 66 SLINALLKETAPTVEKAIEFDFLVCGELLCSSLSEHLQEKG 188
S ++ L+KE E++ D+ +C ++ +S+ L EKG
Sbjct: 293 SALDELMKEEEKAKERSNRKDYWLCPGIVVKVMSKSLAEKG 333
>01_06_1491 - 37739027-37740153,37740318-37741289,37741641-37741845
Length = 767
Score = 25.8 bits (54), Expect = 6.3
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -3
Query: 136 TRKSNSMAFSTVGAVSFNNALIKELSSDDSILLWIAY 26
T SN + STVG + + L+ +S+ SI+LW ++
Sbjct: 127 TNISNFTSNSTVGVILDSGNLVLADASNTSIILWQSF 163
>12_01_0722 + 6355972-6359031
Length = 1019
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -3
Query: 187 PFSCKCSDSDEHNSSPHTRKSN 122
P S +CSD E N PH K +
Sbjct: 963 PLSKQCSDRSEPNIMPHASKKD 984
>07_01_0956 + 8029297-8030285,8033204-8033330,8033350-8033640
Length = 468
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 217 SISIVSSVDTPFSCKCSDSDEHNSSPHTR 131
SIS+ +S+ +P S H+++PH R
Sbjct: 248 SISMTASIASPSSSSARPRAPHSTAPHAR 276
>05_03_0654 -
16646717-16647230,16647472-16647633,16648004-16648203,
16648453-16648624,16650226-16650647,16650742-16650987
Length = 571
Score = 25.4 bits (53), Expect = 8.3
Identities = 7/26 (26%), Positives = 19/26 (73%)
Frame = +3
Query: 21 SPYAIQSNIESSELNSLINALLKETA 98
SP+ ++SN + ++S+++ ++K T+
Sbjct: 291 SPFLVESNSDDPNMHSIVDRIIKPTS 316
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,436,822
Number of Sequences: 37544
Number of extensions: 156095
Number of successful extensions: 469
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 339576272
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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